GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-12 17:06:56, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

TSA: Brassica rapa subsp. pekinensis RNA, contig: CF3_10848.
FX701962.1:1090-1109
CCTCCAACAACGGAAGGAGTGTGAACCACT1090AAAGCTAGAGATTGAGGCGGTTTCGTCGCAGAGGCAACCGTGACGTCGCT
TSA: Brassica rapa x Raphanus sativus RNA, contig: BB3_8819.
FX736720.1:998-1017
CCTCCAACAACGGAAGGAGTGTGAACCACT998AAAGCTAGAGATTGAGGCGGTTTCGTCGCAGAGGCAACCGTGACGTCGCT
Brassica napus cultivar Xiang5A chromosome 17.
CP123892.1:9674700-9674719
CCTCCAACAACGGAAGGAGTGTGAACCACT9674700AAAGCTAGAGATTGAGGCGGTTTCGTCGCAGAGGCAACCGTGACGTCGCT
SS2127.txt NaCl treated Chinese cabbage seedling library Brassica rapa subsp. pekinensis cDNA clone SS2127.txt 5', mRNA sequence.
CV546065.1:168-187
AGTGACGTCACGGTTGCCTCTGCGACGAAA168CCGCCTCAATCTCTAGCTTTAGTGGTTCACACTCCTTCCGTTGTTGGAGG
BR044420 salt-treated whole plant cDNA library KBLS Brassica rapa subsp. pekinensis cDNA clone KBLS-063F08 5', mRNA sequence.
EX059776.1:94-113
AGCGACGTCACGGTTGCCTCTGCGACGAAA94CCGCCTCAATCTCTAGCTTTAGTGGTTCACACTCCTTCCGTTGTTGGAGG
BR078590 flower cDNA library KFFB Brassica rapa subsp. pekinensis cDNA clone KFFB-102H11 5', mRNA sequence.
EX092300.1:177-196
AGCGACGTCACGGTTGCCTCTGCGACGAAA177CCGCCTCAATCTCTAGCTTTAGTGGTTCACACTCCTTCCGTTGTTGGAGG
Pyrrhosoma nymphula genome assembly, chromosome: 5.
OY754331.1:116343283-116343302
TCATTCATTACCTCTGATGGCATGGACTGT116343283CCGCCTCAATCTCTAGCTTTGGCTCCAGCTATATCAGATGCTCAGTATAA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/AAAGCTAGAGATTGAGGCGG
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : AAAGCTAGAGATTGAGGCGG | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.096 | 0.087 | search_plus_done; http://172.18.8.135:50400/match?q=AAAGCTAGAGATTGAGGCGG&k=0&no_gap=0&offset=0&limit=50
0.330 | 0.234 | search_minus_done; http://172.18.8.135:50400/match?q=CCGCCTCAATCTCTAGCTTT&k=0&no_gap=0&offset=0&limit=47
0.333 | 0.003 | cgi_end;

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