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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-03 11:41:57, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Mdfw2005p01.y1 Mdfw Malus domestica cDNA clone Mdfw2005p01 5' similar to TR:Q9SX20 Q9SX20 F24J5.19 PROTEIN, mRNA sequence.
CN491714.1:157-177
TGAACTTGACCGTCCTATTTCTATTGGTGG157AAAGCTTCTTCACACCAAGCATTTGAAATTTCTTGACAAAGCAGCGATCGC
020905AARA014036HT (AARA) Royal Gala partially senescing leaf Malus domestica cDNA clone AARA014036, mRNA sequence.
CN878545.1:111-131
TGAACTTGACCGTCCTATTTCTATTGGTGG111AAAGCTTCTTCACACCAAGCATTTGAAATTTCTTGACAAAGCAGCGATCGC
Mdfwg2103F05.g1 Apple_EST_Mdfwg Malus domestica cDNA 5' similar to ref|NP_177024.1| peptide transporter -related [Arabidopsis thaliana] pir|A96710 hypothetical protein F24J5.19 [imported] - Arabidopsi
GO504247.1:228-248
TGAACTTGACCGTCCTATTTCTATTGGTGG228AAAGCTTCTTCACACCAAGCATTTGAAATTTCTTGACAAAGCAGCGATCGC
CHO_OF4963xd04r1.ab1 CHO_OF4 Nicotiana tabacum genomic 3', genomic survey sequence.
FH468854.1:576-596
CGGGCTTTAACTTCAGAATTGGCTGTTGCA576AAAGCTTCTTCACACCAAGCAGAGAAAGACAAAGAGCGTCTCGAATCCTCC
CHO_OF6771xd12r1.ab1 CHO_OF6 Nicotiana tabacum genomic 3', genomic survey sequence.
FH960051.1:312-332
CGGGCCTTAACCTCAGAATTGGCGATTACA312AAAGCTTCTTCACACCAAGCAGAGAAAGACAAAGAGCGTCTCGAGTCCTCC
Malus hybrid cultivar cultivar Flame chromosome 16.
CP141925.1:2602004-2602024
TGAACTTGACCGTCCTATTTCTATTGGTGG2602004AAAGCTTCTTCACACCAAGCATTTGAAGTAACTCTCTCTCTCTCTCTCTCT
Malus hybrid cultivar cultivar Flame chromosome 16.
CP141942.1:3011891-3011911
TGAACTTGACCGTCCTATTTCTATTGGTGG3011891AAAGCTTCTTCACACCAAGCATTTGAAGTAACTCTCTCTCTCTCTCTCTCT
Malus hybrid cultivar cultivar Royalty chromosome 12.
CP141964.1:3964449-3964469
TGAACTTGACAGTCCTATTTCTATTGGTGG3964449AAAGCTTCTTCACACCAAGCATTTGAATTTTGTAGACAATGGATTAAGTGA
Malus hybrid cultivar cultivar Royalty chromosome 16.
CP141968.1:2800082-2800102
TGAACTTGACCGTCCTATTTCTATTGGTGG2800082AAAGCTTCTTCACACCAAGCATTTGAAGTAACTCTCTCTCTCTCTCTCTCT
Malus hybrid cultivar cultivar Royalty chromosome 12.
CP141981.1:4096022-4096042
TGAACTTGACCGTCCTATTTCTATTGGTGG4096022AAAGCTTCTTCACACCAAGCATTTGAATTTCGTAGACAATGGATTAAGTGA
Malus hybrid cultivar cultivar Royalty chromosome 16.
CP141985.1:3328936-3328956
TGAACTTGACCGTCCTATTTCTATTGGTGG3328936AAAGCTTCTTCACACCAAGCATTTGAAGTAACTCTCTCTCTCTCTCTCTCT
Malus hybrid cultivar cultivar SH6 chromosome 12.
CP143369.1:3899041-3899061
TGAACTTGACCGTCCTATTTCTATTGGTGG3899041AAAGCTTCTTCACACCAAGCATTTGAATTTCGTAGACAATGGATTAAGTGA
Malus hybrid cultivar cultivar SH6 chromosome 16.
CP143373.1:3046777-3046797
TGAACTTGACCGTCCTATTTCTATTGGTGG3046777AAAGCTTCTTCACACCAAGCATTTGAAGTAACTCTCTCTCTCTCTCTCTCT
Malus hybrid cultivar cultivar SH6 chromosome 16.
CP143390.1:2646784-2646804
TGAACTTGACGGTCCTATTTCTATTGGTGG2646784AAAGCTTCTTCACACCAAGCATTTGAAGTAACTCTCTCTCTCTCTCTCTCT
Malus sylvestris genome assembly, chromosome: 12.
OU696514.1:3862462-3862482
TGAACTTGACCGTCCTATTTCTATTGGTGG3862462AAAGCTTCTTCACACCAAGCATTTGAATTTCGTAGACAATGGATTAAGTGA
Malus sylvestris genome assembly, chromosome: 16.
OU696518.1:2848066-2848086
TGAACTTGACCGTCCTATTTCTATTGGTGG2848066AAAGCTTCTTCACACCAAGCATTTGAAGTAACTCTCTCTCTCTCTCTCTCT
Malus domestica genome assembly, chromosome: 12.
OU696688.1:3996319-3996339
TGAACTTGACCGTTCTATTTCTATTGGTGG3996319AAAGCTTCTTCACACCAAGCATTTGAATTTCGTAGACAATGGATTAAGTGA
Malus domestica genome assembly, chromosome: 16.
OU696692.1:3035362-3035382
TGAACTTGACCGTCCTATTTCTATTGGTGG3035362AAAGCTTCTTCACACCAAGCATTTGAAGTAACTCTCTCTCTCTCTCTCTCT
Malus domestica genome assembly, chromosome: 12.
OU744553.1:3892954-3892974
TGAACTTGACCGTCCTATTTCTATTGGTGG3892954AAAGCTTCTTCACACCAAGCATTTGAATTTCGTAGACAATGGATTAAGTGA
Malus domestica genome assembly, chromosome: 16.
OU744557.1:3038495-3038515
TGAACTTGACCGTCCTATTTCTATTGGTGG3038495AAAGCTTCTTCACACCAAGCATTTGAAGTAACTCTCTCTCTCTCTCTCTCT
Malus domestica genome assembly, chromosome: 12.
OU744964.1:3746871-3746891
TGAACTTGACCGTCCTATTTCTATTGGTGG3746871AAAGCTTCTTCACACCAAGCATTTGAATTTCGTAGACAATGGATTAAGTGA
Malus domestica genome assembly, chromosome: 16.
OU744968.1:3030132-3030152
TGAACTTGACCGTCCTATTTCTATTGGTGG3030132AAAGCTTCTTCACACCAAGCATTTGAAGTAACTCTCTCTCTCTCTCTCTCT
Malus domestica genome assembly, chromosome: 16.
OU745006.1:3048721-3048741
TGAACTTGACCGTCCTATTTCTATTGGTGG3048721AAAGCTTCTTCACACCAAGCATTTGAAGTAACTCTCTCTCTCTCTCTCTCT
Malus x robusta genome assembly, chromosome: 3.
OY720327.1:3415309-3415329
TGAACTTGACCGTCCTATTTCTATTGGTGG3415309AAAGCTTCTTCACACCAAGCATTTGAAGTAACTCTCTCTCTCTCTCTCTCT
Pyrus communis genome assembly, chromosome: 4.
OY757071.1:2455485-2455505
TGAACTTGACGGTCCTATTTCTATTGGTGG2455485AAAGCTTCTTCACACCAAGCATTTGAAGTAACTCTCTCTCTCTCTCTCTCT
Pyrus communis genome assembly, chromosome: 4.
OY757071.1:2473324-2473344
TGAACTTGACGGTCCTATTTCTATTGGTGG2473324AAAGCTTCTTCACACCAAGCATTTGAAGTAACTCTCTCTCTCTCTCTCTCT
Rhaphigaster nebulosa genome assembly, chromosome: 1.
OX411306.1:64664806-64664826
AGAACGTGTTTATGTGAGCATGAGCTCTTA64664806AAAGCTTCTTCACACCAAGCATTCCAGTCGCTCCATTCCATCGTTCCTTAT
Danio kyathit genome assembly, chromosome: 5.
LR812523.1:35169661-35169681
AGAATATAATAAACATACTAATAGTTGTTA35169661TGCTTGGTGTGAAGAAGCTTTAAATGTAAAAAATAACATCCTAACTTCCTA
Malus hybrid cultivar cultivar Flame chromosome 12.
CP141921.1:27547883-27547903
TCACTTAATCCATTGTCTACAAAATTCAAA27547883TGCTTGGTGTGAAGAAGCTTTCCACCAATAGAAATAGGACTGTCAAGTTCA
Malus hybrid cultivar cultivar Flame chromosome 12.
CP141938.1:27947157-27947177
TCACTTAATCCATTGTCTACGAAATTCAAA27947157TGCTTGGTGTGAAGAAGCTTTCCACCAATAGAAATAGGACGGTCAAGTTCA
Lactuca saligna genome assembly, chromosome: 5.
OX465081.1:81272306-81272326
ATCTCTAATCATCCAAGGTGCACCTCAACA81272306TGCTTGGTGTGAAGAAGCTTTCAGTATCATTGCGTCAAAGTAGGGGAAAGT
Malus x robusta genome assembly, chromosome: 13.
OY720337.1:27735803-27735823
TCACTTAATCCATTGTCTACAAAATTCAAA27735803TGCTTGGTGTGAAGAAGCTTTCCACCAATAGAAATAGGACTGTCAAGTTCA

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/AAAGCTTCTTCACACCAAGCA
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : AAAGCTTCTTCACACCAAGCA | format : html | download : | debug : 

0.008 | 0.008 | search_start;
0.408 | 0.399 | search_plus_done; http://172.18.8.135:50400/match?q=AAAGCTTCTTCACACCAAGCA&k=0&no_gap=0&offset=0&limit=50
0.526 | 0.118 | search_minus_done; http://172.18.8.135:50400/match?q=TGCTTGGTGTGAAGAAGCTTT&k=0&no_gap=0&offset=0&limit=23
0.529 | 0.003 | cgi_end;

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