GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-04 19:02:05, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Capricornis sumatraensis isolate serow.1 chromosome 6.
CP135632.1:99515147-99515166
ACCTTCCTGGTTTGTTTGACTTGAAAGACA99515147AAAGGGCAAAGTTAGGAGACTATTAATATTTGGAGTGCAATGTCTGCCTG
Lotus japonicus genomic DNA, chromosome 3, clone: LjB09K03, BM1720.
AP009632.1:2278-2297
AATTTCGTAGTTGAATGACGATTTTCGCAG2278AAAGGGCAAAGTTAGGAGACTAAAAGTGCAATTAAGCCAAATATATATAT
Lotus japonicus B-129 DNA, chromosome 3, complete sequence.
AP022631.1:59292614-59292633
AATTTCGTAGTTGAATGACGATTTTCGCAG59292614AAAGGGCAAAGTTAGGAGACTAAAAGTGCAATTAAGCCAAATATATATAT
Gymnocheta viridis genome assembly, chromosome: 4.
OY101443.1:90629564-90629583
ACGTTGTGGAAACACTTCGGAGATCATAAA90629564AAAGGGCAAAGTTAGGAGACCCATAGTTGAGAAAACGATATGCATGACAA
Ovis canadensis canadensis isolate 43U chromosome 2 sequence.
CP011887.1:22334172-22334191
CAGGCAGACATTGCACTCCAAATATTAATA22334172GTCTCCTAACTTTGCCCTTTTGTCTTTCAAGTCAAACAAACCAGGAAGGT
Valencia hispanica genome assembly, chromosome: 20.
OY747719.1:34052499-34052518
AGGTAAAGGGACAATTTTTTTACTATTTCT34052499GTCTCCTAACTTTGCCCTTTCTCTTCCTCTTTGCCCAGTCAGTTTTTGGC
Lotus japonicus genomic DNA, chromosome 4, clone: LjT15P01, TM1974.
AP010352.1:36397-36416
ATGTAAAATTAAGGCTTAATTGCACTTTTT36397GTCTCCTAACTTTGCCCTTTTTGTGAAAACAGTTCCCCAACTAAGAAATT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/AAAGGGCAAAGTTAGGAGAC
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : AAAGGGCAAAGTTAGGAGAC | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.272 | 0.263 | search_plus_done; http://172.18.8.135:50400/match?q=AAAGGGCAAAGTTAGGAGAC&k=0&no_gap=0&offset=0&limit=50
0.364 | 0.092 | search_minus_done; http://172.18.8.135:50400/match?q=GTCTCCTAACTTTGCCCTTT&k=0&no_gap=0&offset=0&limit=46
0.366 | 0.002 | cgi_end;

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