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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
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2025-03-15 15:26:29, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Acrocephalus scirpaceus scirpaceus genome assembly, chromosome: 13.
OU383786.1:1393020-1393039
GCAGCTCCTGCCTGAGGCACATCAGGTGAG1393020AAAGGGTTTGCATGTTCCACATCCCAGGATCTTCCAGTCCTCGTTTCCGA
Cinclus cinclus genome assembly, chromosome: 16.
OY759693.1:11300312-11300331
CTCCTGCCTGAGGCACATCAGGTGAGAGAG11300312AAAGGGTTTGCATGTTCCACCATCCCAGGATCTTCCACTCCTCGTTTCCC
mh2_0025_B04 Chickpea leave library Cicer arietinum cDNA clone mh2_0025_B04 5', mRNA sequence.
FE670191.1:154-173
TTCTGAAGCAGCGAAACAGAGTATGAAGAA154AAAGGGTTTGCATGTTCCACCATGGAGAAAACTTGAATATGTTAGATCAA
LCUSE1NG_T3_020_E10_14JUN2007_072 LCUSE1NG Lens culinaris cDNA, mRNA sequence.
GT620395.1:226-245
TTCTGAGGCAGCAAAACAGAGTCTGAAGAA226AAAGGGTTTGCATGTTCCACCATGGAGAAAACTCGAATACGTTAGATCAA
LCUSE1NG_T3_028_A08_14JUN2007_064 LCUSE1NG Lens culinaris cDNA, mRNA sequence.
GT621087.1:363-382
TTCTGAGGCAGCAAAACAGAGTCTGAAGAA363AAAGGGTTTGCATGTTCCACCATGGAGAAAACTCGAATACGTTAGATCAA
Cicer arietinum chromosome Ca3.
CP039333.1:30934115-30934134
TTCTGAAGCAGCGAAACAGAGTATGAAGAA30934115AAAGGGTTTGCATGTTCCACCATGGAGAAAACTTGAATATGTTAGATCAA
Cicer arietinum chromosome Ca3.
CP040768.1:30934115-30934134
TTCTGAAGCAGCGAAACAGAGTATGAAGAA30934115AAAGGGTTTGCATGTTCCACCATGGAGAAAACTTGAATATGTTAGATCAA
Trifolium repens isolate ACLI19 chromosome 07_0cc.
CP125848.1:47214747-47214766
TTCTGAAGCAGCAAAACAGAGTTTGAAGAA47214747AAAGGGTTTGCATGTTCCACCTTGGAGAAAACTAGAATATGTTAGATCAA
Trifolium repens isolate ACLI19 chromosome 07_Pall.
CP125849.1:46753239-46753258
ATCTGAGGCAGCGAAACAGAGTTTGAAGAA46753239AAAGGGTTTGCATGTTCCACCTTGGAGAAAACTAGAATATGTTAGATCAA
Medicago arabica genome assembly, chromosome: 6.
OX326969.1:50288665-50288684
ATCTGAGGCAGCGAAACAGAGTTTGAAGAA50288665AAAGGGTTTGCATGTTCCACCTTGGAGAAAACTTGAATACGTTAGATCAA
Trifolium fragiferum genome assembly, chromosome: 5.
OX940793.1:48551051-48551070
ATGTGAGGCAGCGAAACAGAGTTTGAAGAA48551051AAAGGGTTTGCATGTTCCACCTTGGAGAAAACTAGAATATGTTAGATCAA
Lathyrus aphaca genome assembly, chromosome: 3.
OZ014521.1:446743251-446743270
TTCTAAGGCAGTGGAACAAAATCTGAAGAA446743251AAAGGGTTTGCATGTTCCACCGTGGAATCAATGAAGAAACTGAGAGAAAA
Lathyrus aphaca genome assembly, chromosome: 3.
OZ014521.1:446746901-446746920
TCTAATGGCAGTGGAACAAAATCTGAAGAA446746901AAAGGGTTTGCATGTTCCACCGTGGAATCAATGAAGAAACTGAGAGAAAA
Fringilla coelebs genome assembly, chromosome: 16.
OY740740.1:15135618-15135637
GGAAACGAGGGCTGTGGAAGATCCTGGGAT15135618GTGGAACATGCAAACCCTTTCTCTCTCTCACCTGAGCTGCCTCAGGCAGG
Trifolium pratense cDNA clone:RCE32524.
BB924246.1:524-543
TTGATCTAACATATTCTAGTTTTCTCCAAG524GTGGAACATGCAAACCCTTTTTCTTCAAACTCTGTTTCGCTGCTTCA
Trifolium pratense cDNA clone:RCE33811.
BB925043.1:490-509
TTGATCTAACATATTCTAGTTTTCTCCAAG490GTGGAACATGCAAACCCTTTTTCTTCAAACTCTGTTTCGCTGCTTCAGAT
Trifolium pratense cDNA clone:RCE38959.
BB927833.1:435-454
TTGATCTAACATATTCTAGTTTTCTCCAAG435GTGGAACATGCAAACCCTTTTTCTTCAAACTCTGTTTCGCTGCTTCAGAT
CPA04e05.y.esd subtracted cDNA library of drought stressed chickpea Cicer arietinum cDNA, mRNA sequence.
EH058883.1:377-396
TTGATCTAACATATTCAAGTTTTCTCCATG377GTGGAACATGCAAACCCTTTTTCTTCATACTCTGTTTCGCTGCTTCAGAA
CPB04b02.y.esd subtracted cDNA library of drought stressed chickpea Cicer arietinum cDNA, mRNA sequence.
EH059208.1:378-397
TTGATCTAACATATTCAAGTTTTCTCCATG378GTGGAACATGCAAACCCTTTTTCTTCATACTCTGTTTCGCTGCTTCAGAA
Trifolium repens mRNA, clone: WCC23b06_082, unspecified EST.
FY462040.1:528-547
TTGATCTAACATATTCTAGTTTTCTCCAAG528GTGGAACATGCAAACCCTTTTTCTTCAAACTCTGTTTCGCTGCCTCAGAT
Trifolium repens mRNA, clone: WCC32h24_092, unspecified EST.
FY465392.1:524-543
TTGACCTAACATACTCTAGTTTTCTCCAAG524GTGGAACATGCAAACCCTTTTTCTTCAAACTCTGTTTCGCTGCCTCAGAT
TSA: Medicago sativa cultivar Chilean F0D_8138 mRNA sequence.
JL874565.1:560-579
TTGATCTAACGTATTCGAGTTTTCTCCAAG560GTGGAACATGCAAACCCTTTTTCTTCAAACTCTGTTTCGCTGCCTCAGAT
TSA: Medicago sativa subsp. falcata cultivar Wisfal FZ0_2213 mRNA sequence.
JL883412.1:530-549
TTGATCTAACGTATTCGAGTTTTCTCCAAG530GTGGAACATGCAAACCCTTTTTCTTCAAACTCTGTTTCGCTGCCTCAGAT
Trifolium subterraneum genome assembly, chromosome: 8.
OX637468.1:9423096-9423115
TTGATCTAACATATTCTAGTTTTCTCCATG9423096GTGGAACATGCAAACCCTTTTTCTTCAAACTATGTTTCGCTGCTTCAGAT
Medicago lupulina genome assembly, chromosome: 2.
OY283140.1:9403035-9403054
TTGATCTAACGTATTCAAGTTTTCTCCAAG9403035GTGGAACATGCAAACCCTTTTTCTTCAAACTCTGTTTCGCTGCCTCAGAT

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/AAAGGGTTTGCATGTTCCAC
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : AAAGGGTTTGCATGTTCCAC | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.411 | 0.402 | search_plus_done; http://172.18.8.135:50400/match?q=AAAGGGTTTGCATGTTCCAC&k=0&no_gap=0&offset=0&limit=50
0.747 | 0.337 | search_minus_done; http://172.18.8.135:50400/match?q=GTGGAACATGCAAACCCTTT&k=0&no_gap=0&offset=0&limit=37
0.755 | 0.008 | cgi_end;

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