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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-03 11:46:39, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Acomys kempi genome assembly, chromosome: 1.
OU015355.1:131608122-131608139
GTTATCAACAAAAAGAAGAGAGAAGAATGA131608122AAAGTCAGTAGCCCAAAGTTGAAGGAATTGGAGAAGGAGTCAAAACGC
Acomys dimidiatus genome assembly, chromosome: 1.
OU015374.1:131447785-131447802
GTTATCAACAAAAAGAAGAGAGAAGAATGA131447785AAAGTCAGTAGCCCAAAGTTGAAGGAATTGGAGAAGGAGACAAAACAC
Onychomys leucogaster genome assembly, chromosome: 8.
OX460378.1:60115409-60115426
TGTTGGCTGTATCTCCACACACAGGCCTTA60115409AAAGTCAGTAGCCCAAAGAAAGCTTGGGGCTGAAGGCAACACAGGGCA
Peromyscus eremicus genome assembly, chromosome: 8a.
OX460401.1:59387352-59387369
TTGGCTATGTCTCCACACACACAGGACTTA59387352AAAGTCAGTAGCCCAAAGAAAGCTTGGGGCTGAAGGCCACACAGGGCA
Onychomys leucogaster genome assembly, chromosome: 8.
OX460425.1:60074302-60074319
TGTTGGCTGTATCTCCACACACAGGCCTTA60074302AAAGTCAGTAGCCCAAAGAAAGCTTGGGGCTGAAGGCAACACAGGGCA
Onychomys arenicola genome assembly, chromosome: 8.
OX460449.1:57800365-57800382
TGTTGGCTGTATCTCCACACACAGGCCTTA57800365AAAGTCAGTAGCCCAAAGAAAGCTTGGGGCTGAAGGCAACACAGGGCA
Peromyscus eremicus genome assembly, chromosome: 8a.
OX460473.1:58415457-58415474
TTGGCTATGTCTCCACACACACAGGACTTA58415457AAAGTCAGTAGCCCAAAGAAAGCTTGGGGCTGAAGGCCACACAGGGCA
Sylvilagus floridanus genome assembly, chromosome: 2.
OX463224.1:84902713-84902730
ATGGCTGCAATTCCAGGGCTAGGCTAGGCT84902713AAAGTCAGTAGCCCAAAGCTCCATTCAGCTCTTCCATGTGAATGGCAG
Erpetoichthys calabaricus genome assembly, chromosome: 9.
LR536440.2:71978504-71978521
ACTTGACAGGAGTCGTCTTTAAATGAAGCC71978504AAAGTCAGTAGCCCAAAGGGTACTGAAATGTGTGACAGCTGCCATATT
Homo sapiens chromosome 1 clone RP11-39G19 map 1, WORKING DRAFT SEQUENCE, 25 unordered pieces.
AC010855.3:4812-4829
TTCTTTGCCTAGTGTACAAATGATGAGGAT4812AAAGTCAGTAGCCCAAAGCCTTGCCGTCAGCAATCTGTATCTCCAATA
Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB085J21, *** SEQUENCING IN PROGRESS ***, 4 unordered pieces.
AC232529.1:114275-114292
CTCATAGTTCTTTCAGCGACTGGTGGGATC114275AAAGTCAGTAGCCCAAAGATGAGCAGCGGTAACAAAACATTCACTGCA
Brassica napus cultivar Xiang5A chromosome 3.
CP123878.1:24718116-24718133
CTCATAGTTCTTTCAGCGACTGGTGGGATC24718116AAAGTCAGTAGCCCAAAGATGAGCAGCGGTAACAAAACATTCACTGCA
Capsicum rhomboideum cultivar Andean isolate CrT2T chromosome 13.
CP124707.1:21464594-21464611
CACATAGAGCAAAGAACAGTAAGCATAACA21464594AAAGTCAGTAGCCCAAAGCAGAATAATAGACTAAAAATATTTTAAGAG
Brassica napus genome assembly, chromosome: C07.
HG994371.1:48563763-48563780
CTCATAGTTCTTTCAGCGACTGGTGGGATC48563763AAAGTCAGTAGCCCAAAGATGAGCAGCGGTAACAAAACATTCACTGCA
Allium cepa genome assembly, chromosome: 8.
LR994636.1:192637978-192637995
TGATTGGGCAAGTTAGACTAGACTATCATC192637978AAAGTCAGTAGCCCAAAGAGATGATCGTGGGATCCAGAGATCAAGCAC
Xanthogramma pedissequum genome assembly, chromosome: 2.
OU343161.1:101631668-101631685
AATCGGAAACGACCTGTATTTGAACTTAAA101631668AAAGTCAGTAGCCCAAAGATTGTTCTATTGCGCTCGAATTAATTCTGG
Melolontha melolontha genome assembly, chromosome: 4.
OW285238.1:178602941-178602958
AAACAAAGCATCATGCAATTTTTATTAAAA178602941AAAGTCAGTAGCCCAAAGAATGTTCATGAGAGGATGGTGGCAGTGTAT
Cheilosia pagana genome assembly, chromosome: 5.
OW386170.1:44012697-44012714
TCAAATTGACTTTTGAGAGATTTGACAGCT44012697AAAGTCAGTAGCCCAAAGAAATTTGTTGGGCTATTATTTGCAGTTTTT
Beris morrisii genome assembly, chromosome: 2.
OX638311.1:77253630-77253647
TTGCATAAGTGCACAGCTGGAAATTGAATT77253630AAAGTCAGTAGCCCAAAGCGGACAAAAAGATACACCAAGTGTGTAAAT
Pyrrhosoma nymphula genome assembly, chromosome: 1.
OY754327.1:200671769-200671786
CCAAAGACGGCCAAAGCCTTTATGAAAATC200671769AAAGTCAGTAGCCCAAAGCATCTAGCCTCAGCTAATGCACAAAGTGAG
Diogma glabrata genome assembly, chromosome: 2.
OY856187.1:200316355-200316372
CCTTGACCTGATCCACTGTTGCTAGTTTTT200316355AAAGTCAGTAGCCCAAAGACTGGATCGCATTATACAACGTAAAAAAAT
Oxystoma pomonae genome assembly, chromosome: 5.
OY998167.1:46603442-46603459
CCAACTCAGTGGAAAGTTTTACCACTCCCC46603442AAAGTCAGTAGCCCAAAGGATGTTTCGGACCTCCGACCCATTAGTCTT
Oxystoma pomonae genome assembly, chromosome: 5.
OY998167.1:67060284-67060301
TGGAAAGTAGCAGAAATTTTACCACTCCCC67060284AAAGTCAGTAGCCCAAAGGATGTTTGGGACCTCCGACCCATTAGTCTT
Ascidiella aspersa genome assembly, chromosome: 1.
OZ004607.1:22878800-22878817
GCATCTGTAATTACTTAACATCACCGGAAC22878800AAAGTCAGTAGCCCAAAGTTTATTATATTATATCAATGACGACATAAT
Phaonia tiefii genome assembly, chromosome: 2.
OZ008368.1:16355317-16355334
TATTTAATCATTGTTGACCAAATAAAAGTA16355317AAAGTCAGTAGCCCAAAGTTAGTGGCATCAATGGCTCTCGACAATGTG
Homo sapiens BAC clone RP11-18H21 from 4, complete sequence.
AC079340.8:134138-134155
TATTGGAGATACAGATTGCTGACGGCAAGG134138CTTTGGGCTACTGACTTTATCCTCATCATTTGTACACTAGGCAAAGAA
Homo sapiens chromosome 4 clone VMRC69-118A14, complete sequence.
AC277741.1:42299-42316
TATTGGAGATACAGATTGCTGACGGCAAGG42299CTTTGGGCTACTGACTTTATCCTCATCATTTGTACACTAGGCAAAGAA
Homo sapiens DNA, chromosome 4, nearly complete genome.
AP023464.1:151148871-151148888
TATTGGAGATACAGATTGCTGACGGCAAGG151148871CTTTGGGCTACTGACTTTATCCTCATCATTTGTACACTAGGCAAAGAA
Homo sapiens isolate CHM13 chromosome 4.
CP068274.2:155546109-155546126
TATTGGAGATACAGATTGCTGACGGCAAGG155546109CTTTGGGCTACTGACTTTATCCTCATCATTTGTACACTAGGCAAAGAA
Homo sapiens isolate NA24385 chromosome 4.
CP139517.1:153609920-153609937
TATTGGAGATACAGATTGCTGACGGCAAGG153609920CTTTGGGCTACTGACTTTATCCTCATCATTTGTACACTAGGCAAAGAA
Homo sapiens isolate NA24385 chromosome 4.
CP139540.1:154398004-154398021
TATTGGAGATACAGATTGCTGACGGCAAGG154398004CTTTGGGCTACTGACTTTATCCTCATCATTTGTACACTAGGCAAAGAA
Acomys kempi genome assembly, chromosome: 2.
OU015356.1:22141639-22141656
GTGTAAAAGTAGAGTCTCGGAGATGAGACT22141639CTTTGGGCTACTGACTTTCAGGGGCTGAAGGGGTGCTTATGGAGGTGT
Acomys dimidiatus genome assembly, chromosome: 2.
OU015375.1:22712179-22712196
GTGTAAAAGTAGAGTCTCGGAGACGAGACT22712179CTTTGGGCTACTGACTTTCAGGGGCTGAAGGGGTGCTTATGGAGGTGT
Martes martes genome assembly, chromosome: 7.
OY734069.1:57288051-57288068
CAAGTACATGTATCAGACTAGGAACAGGAC57288051CTTTGGGCTACTGACTTTTTAAAAATACTTCCATTTTAATTTAATTTC
Rana temporaria genome assembly, chromosome: 1.
LR991680.1:480098381-480098398
TGCGAACAAGCCTGAGCTCATCCTTTGTTA480098381CTTTGGGCTACTGACTTTTGTATGATACTTCTTGCTTATTAAATAAGC
Eukaryotic synthetic construct chromosome 4.
CP034503.1:153134111-153134128
TATTGGAGATACAGATTGCTGACGGCAAGG153134111CTTTGGGCTACTGACTTTATCCTCATCATTTGTACACTAGGCAAAGAA
Eukaryotic synthetic construct chromosome 4.
CP034528.1:153134111-153134128
TATTGGAGATACAGATTGCTGACGGCAAGG153134111CTTTGGGCTACTGACTTTATCCTCATCATTTGTACACTAGGCAAAGAA
Callithrix jacchus mRNA, clone: MLI-021D15, 5'end sequence, expressed in liver.
HX449790.1:149-166
CTTTCCGTGACTGCTGACGCTTGGGTGTGC149CTTTGGGCTACTGACTTTCAGCTGGAACTTGAAGGGACCCCCAACCCT
Callithrix jacchus mRNA, clone: MLI-022D15, 5'end sequence, expressed in liver.
HX450071.1:149-166
CTTTCCGTGACTGCTGACGCTTGGGTGTGC149CTTTGGGCTACTGACTTTCAGCTGGAACTTGAAGGGACCCCCAACCCT
Callithrix jacchus mRNA, clone: MLI-103E23, 5'end sequence, expressed in liver.
HX472707.1:158-175
CTTTCCGTGACTGCTGACGCTTGGGTGTGC158CTTTGGGCTACTGACTTTCAGCTGGAACTTGAAGGGACCCCCAACCCT
TSA: Petunia integrifolia subsp. inflata PETIN009382:Contig1 mRNA sequence.
JI365428.1:494-511
ACATGGGATTTGATTTGATTTAGGCCTCTT494CTTTGGGCTACTGACTTTATTGTATATGAGTGTGATGTTGCATTTTTT
Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH039L17, *** SEQUENCING IN PROGRESS ***, 4 ordered pieces.
AC241126.1:46553-46570
TGCAGTGAATGTTTTGTTACCGCTGCTCAT46553CTTTGGGCTACTGACTTTGATCCCACCAGTCGCTGAAAGAACTATGAG
Brassica napus cultivar Xiang5A chromosome 19.
CP123894.1:7215912-7215929
TGCAGTGAATGTTTTGTTACCGCTGCTCAT7215912CTTTGGGCTACTGACTTTGATCCCACCAGTCGCTGAAAGAACTATGAG
Buxus sempervirens genome assembly, chromosome: 6.
OX387187.1:8708857-8708874
TATATTAATCTAGTTAACAGTTCCACTGAT8708857CTTTGGGCTACTGACTTTGAAAAGTGGTTTTGGCTTGTACTGGCTCTT
Alisma plantago-aquatica genome assembly, chromosome: 5.
OY856413.1:467910771-467910788
ATCAAGCCATGGAGTCAACTACAAGATCAA467910771CTTTGGGCTACTGACTTTGGCTACCACAATTGAGGTTTTGATTGTCTT
Straminergon stramineum genome assembly, chromosome: 6.
OY987268.1:14149363-14149380
TCAACCGACATTTGTCACACATCGGCGTAA14149363CTTTGGGCTACTGACTTTTCCCTGTTGATAGAATTGACAGTAAGAAAA
Alviniconcha strummeri genome assembly, chromosome: 2.
OY757542.1:8815468-8815485
TTTCCCACTGTGGTTGAATACATCCATTTT8815468CTTTGGGCTACTGACTTTTTATGGTGTGCTTGGTTTTCACTTGCCCTT
Oxystoma pomonae genome assembly, chromosome: 6.
OY998168.1:88511989-88512006
AAGACTAATGGGTCGGAGGTCCGAAACATC88511989CTTTGGGCTACTGACTTTGGGGAGTGGTAAAACTTCTTCTACTTTCCA

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/AAAGTCAGTAGCCCAAAG
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : AAAGTCAGTAGCCCAAAG | format : html | download : | debug : 

0.008 | 0.008 | search_start;
0.196 | 0.188 | search_plus_done; http://172.18.8.135:50400/match?q=AAAGTCAGTAGCCCAAAG&k=0&no_gap=0&offset=0&limit=50
0.819 | 0.623 | search_minus_done; http://172.18.8.135:50400/match?q=CTTTGGGCTACTGACTTT&k=0&no_gap=0&offset=0&limit=25
0.835 | 0.015 | cgi_end;

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