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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-03 11:33:46, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH048J07, *** SEQUENCING IN PROGRESS ***, 6 ordered pieces.
AC241136.1:33723-33749
AAAGAATATATAATGTGATTTCATAAAAAA33723AAAGTTCACACAAATGATTTTGATATTAGAAAAAGAAATATTTTTCTTTTAAAACAT
Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB044D19, complete sequence.
AC189357.2:8386-8412
TATGTGTATATAATGTGATTTCATAAAAAA8386AAAGTTCACACAAATGATTTTGATATTAGATTTGAGAAGTCACTTTCCTAGGTGTCG
Brassica napus cultivar Xiang5A chromosome 3.
CP123878.1:19201143-19201169
AAAGAATATATAATGTGATTTCATAAAAAA19201143AAAGTTCACACAAATGATTTTGATATTAGAAAAAGAAATATTTTTCTTTTAAAACAT
Brassica napus cultivar Xiang5A chromosome 4.
CP123879.1:57483106-57483132
ATTTGTATATAATGTGATTTCATAAAAACA57483106AAAGTTCACACAAATGATTTTGATATTAGAAAAAGAAATATTTTTCTTTTAAAACAT
Brassica napus genome assembly, chromosome: A03.
HG994357.1:9421408-9421434
AAAGAATATATAATGTGATTTCATAAAAAA9421408AAAGTTCACACAAATGATTTTGATATTAGAAAAAGAAATATTTTTCTTTTAAAACAT
Brassica napus genome assembly, chromosome: A03.
HG994357.1:19104575-19104601
AAAGAATATATAATGTGATTTCATAAAAAA19104575AAAGTTCACACAAATGATTTTGATATTAGAAAAAGAAATATTTTTCTTTTAAAACAT
Brassica napus genome assembly, chromosome: A09.
HG994363.1:41365785-41365811
ATTTGTATATAATGTGATTTCATAAAAACA41365785AAAGTTCACACAAATGATTTTGATATTAGAAAAAGAAATATTTTTCTTTTAAAACAT
Brassica rapa genome, scaffold: A09.
LR031568.1:45676523-45676549
ATTTGTATATAATGTGATTTCATAAAAACA45676523AAAGTTCACACAAATGATTTTGATATTAGAAAAAGAAATATTTTTCTTTTAAAACAT
Brassica rapa genome, scaffold: A03.
LR031572.1:18918729-18918755
AAAGAATATATAATGTGATTTCATAAAAAA18918729AAAGTTCACACAAATGATTTTGATATTAGAAAAAGAAATATTTTTCTTTTAAAACAT
Brassica rapa genome assembly, chromosome: A03.
LS974619.2:19045510-19045536
AAAGAATATATAATGTGATTTCATAAAAAA19045510AAAGTTCACACAAATGATTTTGATATTAGAAAAAGAAATATTTTTCTTTTAAAACAT
Brassica rapa genome assembly, chromosome: A09.
LS974625.2:56137239-56137265
ATTTGTATATAATGTGATTTCATAAAAACA56137239AAAGTTCACACAAATGATTTTGATATTAGAAAAAGAAATATTTTTCTTTTAAAACAT
Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB044L16, complete sequence.
AC189359.2:14497-14523
ATGTTTTAAAAGAAAAATATTTCTTTTTCT14497AATATCAAAATCATTTGTGTGAACTTTTTTTTTATGAAATCACATTATATATTCTTT
Brassica napus cultivar Xiang5A chromosome 10.
CP123885.1:11762262-11762288
CGACACCTAGGAAAGTGACTTCTCAAATCT11762262AATATCAAAATCATTTGTGTGAACTTTTTTTTTATGAAATCACATTATATACACATA

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/AAAGTTCACACAAATGATTTTGATATT
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : AAAGTTCACACAAATGATTTTGATATT | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.214 | 0.205 | search_plus_done; http://172.18.8.135:50400/match?q=AAAGTTCACACAAATGATTTTGATATT&k=0&no_gap=0&offset=0&limit=50
0.326 | 0.112 | search_minus_done; http://172.18.8.135:50400/match?q=AATATCAAAATCATTTGTGTGAACTTT&k=0&no_gap=0&offset=0&limit=39
0.327 | 0.002 | cgi_end;

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