GGGenome Help | English

データベース：
 

ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-03 15:31:59, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

GA__Ed0074C02r Gossypium arboreum 7-10 dpa fiber library Gossypium arboreum cDNA clone GA__Ed0074C02r, mRNA sequence.
BQ413387.1:24-46
TTTTTTTTTTTTTTTTTTATAAT24AAATCAGCTAATTCCAATCATGTATCATTTAAAGACAAAGCATAAACACATAT
GR__Eb0044N17.f GR__Eb Gossypium raimondii cDNA clone GR__Eb0044N17 5', mRNA sequence.
CO110481.1:6-28
ATAAT6AAATCAGCTAATTCCAATCATGTATCATATAAAGACCAAGCATAAACACATAT
GR__Eb44N17.f GR__Eb Gossypium raimondii cDNA clone GR__Eb44N17 5', mRNA sequence.
CO132180.1:6-28
ATAAT6AAATCAGCTAATTCCAATCATGTATCATATAAAGACCAAGCATAAACACATAT
GH_TMIRS_147_D01_R Cotton Normalized Library dT primed Gossypium hirsutum cDNA, mRNA sequence.
DW510830.1:129-151
AGAAACCGCATATAGATATTTAGTTATAAT129AAATCAGCTAATTCCAATCATGTATCATTTAAAGACAAAGCATAAACACATAT
Gossypioides kirkii chromosome KI_03.
CP032246.1:5202937-5202959
TTGCAATAGGCAAAGAAACTGCATATAGAT5202937AAATCAGCTAATTCCAATCATGTATCATATAAAGACCAAGCATAAACACATAT
Gossypium herbaceum isolate GPA1alz chromosome 3.
CP106697.1:9123256-9123278
AGAAACCGCATATAGATATTTAGTTATAAT9123256AAATCAGCTAATTCCAATCATGTATCATTTAAAGACAAAGCATAAACACATAT
Gossypium bickii isolate GPG1lz chromosome 3.
CP106710.1:10882987-10883009
AGAAACTGCATATAGATATTTAGTTAAAAT10882987AAATCAGCTAATTCCAATCATGTATCATATAAAGACCAAGCATAAACACACAC
GH_TMIRS_147_D01_F Cotton Normalized Library dT primed Gossypium hirsutum cDNA, mRNA sequence.
DW510829.1:670-692
ATATGTGTTTATGCTTTGTCTTTAAATGAT670ACATGATTGGAATTAGCTGATTTATTATAACTAAATATCTATATGCGGTTTCT
UFL_611_24 Cotton fiber 0-10 day post anthesis Gossypium hirsutum cDNA, mRNA sequence.
ES804210.1:667-689
ATATGTGTTTATGCTTTGTCTTTAAATGAT667ACATGATTGGAATTAGCTGATTTATTATAAAAAAAAAAAAAAAAAA
Gossypium raimondii isolate D5-4 chromosome D5_03.
CP032555.1:56680925-56680947
ATATGTGTTTATGCTTGGTCTTTATATGAT56680925ACATGATTGGAATTAGCTGATTTATTATAACTAAATATCTCTATGCAGTTTCT
Gossypium herbaceum isolate Zhongcao1 chromosome 3.
CP106685.1:124152716-124152738
ATATGTGTTTATGCTTTGTCTTTAAATGAT124152716ACATGATTGGAATTAGCTGATTTATTATAACTAAATATCTATATGCGGTTTCT
Gossypium rotundifolium isolate GPK201 chromosome 3.
CP106724.1:194237891-194237913
GTGTGTGTTTATGCTTGGTCTTTATATGAT194237891ACATGATTGGAATTAGCTGATTTATTATAACTAAATATCTATATGCAGTTTCT

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/AAATCAGCTAATTCCAATCATGT
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : AAATCAGCTAATTCCAATCATGT | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.293 | 0.285 | search_plus_done; http://172.18.8.135:50400/match?q=AAATCAGCTAATTCCAATCATGT&k=0&no_gap=0&offset=0&limit=50
0.504 | 0.211 | search_minus_done; http://172.18.8.135:50400/match?q=ACATGATTGGAATTAGCTGATTT&k=0&no_gap=0&offset=0&limit=43
0.508 | 0.003 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).