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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-03 12:33:04, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Solanum melongena mRNA, clone: MLF04O06, 5'end, expressed in leaf at fully expanded leaf.
FS025178.1:63-82
AGTTGCTCTGCTTCACCTCTGTGCTTCTGC63AAATCCGGCCATTCTGTGTATTCATAGTGATACATACAGACTATATATAT
Solanum melongena mRNA, clone: SmFL24B03, 5'end.
FS082423.1:65-84
AGTTGCTCTGCTTCACCTCTGTGCTTCTGC65AAATCCGGCCATTCTGTGTATTCATAGTGATACATACAGACTATATATAT
Solanum melongena mRNA, clone: SmFL24B04, 5'end.
FS082425.1:42-61
AGTTGCTCTGCTTCACCTCTGTGCTTCTGC42AAATCCGGCCATTCTGTGTATTCATAGTGATACATACAGACTATATATAT
Gymnosoma rotundatum genome assembly, chromosome: 1.
OU744336.1:105458321-105458340
CTACCTATTACTGTCTCGAACATTGAAAGG105458321AAATCCGGCCATTCTGTGTAAACTCCATTAAATGTCGGAATTTGTATAAT
Gymnosoma rotundatum genome assembly, chromosome: 4.
OU744339.1:64578927-64578946
CTACCGATTACTGTCTCGAACGTTGAAAAG64578927AAATCCGGCCATTCTGTGTAAACTCCATTAAATATCGGAATTTGTATAAT
Cistogaster globosa genome assembly, chromosome: 1.
OW569403.1:98331473-98331492
CTACCGATTACTGTCTCGAACATTAAAAAG98331473AAATCCGGCCATTCTGTGTAAACTTCATTAAATGTTTGAATTTGTATAAT
Merzomyia westermanni genome assembly, chromosome: 2.
OX465289.1:103692109-103692128
TTGTGGACAAAAGTTTGAAACATGCCGTAA103692109AAATCCGGCCATTCTGTGTATATTCCAAATCACGGTAACTTCAGTTCGGA
Linnaemya tessellans genome assembly, chromosome: 2.
OX637533.1:70612947-70612966
CCACCAATAACTGTTTCAAACATTGAAAAG70612947AAATCCGGCCATTCTGTGTATACTCCATTGAATGTTGGGATTTGTATGAC
Linnaemya tessellans genome assembly, chromosome: 3.
OX637534.1:45379156-45379175
CCACCAATAACTGTTTCAAACATTGAAAAG45379156AAATCCGGCCATTCTGTGTATACTCCATTCAATATTGGGGTTTGTATGAC
Linnaemya tessellans genome assembly, chromosome: X.
OX637537.1:16522314-16522333
CCACCAATAACTGTTTCAAACATTGAAAAG16522314AAATCCGGCCATTCTGTGTATACTCCATTGAATGTTGGGATTTGTATGAC
Linnaemya vulpina genome assembly, chromosome: X.
OY776281.1:31141209-31141228
CCAACAATAACTGTTTCAAACATTGAAAAG31141209AAATCCGGCCATTCTGTGTATACTCCATTGAATGTTGGGATTTGTATGAT
Caenorhabditis plicata genome assembly, chromosome: 4.
OZ007492.1:12014931-12014950
AAAAAGCAGTCCGAGGAGGGCGGAACACCA12014931AAATCCGGCCATTCTGTGTACTGAACATGATGGACGGTTTTAGATTCTAA
Gymnosoma rotundatum genome assembly, chromosome: 2.
OU744337.1:52354256-52354275
ATTATACAAATTCCGACATATAATGGAGTT52354256TACACAGAATGGCCGGATTTCTTTTCAATGTTCGAGACAGTAATCGGTAG
Stomorhina lunata genome assembly, chromosome: 1.
OW121740.1:105886091-105886110
ATCATACAAATACCGATATTCAATGGCATT105886091TACACAGAATGGCCGGATTTCTTTTCAATGTTTGAAACAGTAATTGATAA
Stomorhina lunata genome assembly, chromosome: 1.
OW121740.1:141690728-141690747
ATCATACAAATACCGATATTCAATGGCATT141690728TACACAGAATGGCCGGATTTCTTTTCAATGTTTGAAACAGTAATTGATAA
Stomorhina lunata genome assembly, chromosome: 2.
OW121741.1:57845395-57845414
ATCATACAAATACCGTCATTCAATGGCATT57845395TACACAGAATGGCCGGATTTCTTTTCAATGTTTAAAACAGTAATTGATAA
Stomorhina lunata genome assembly, chromosome: 3.
OW121742.1:47695002-47695021
ATCATACAAATACCGATATTCAATGGCATT47695002TACACAGAATGGCCGGATTTCTTTTCAATGTTTGAAACAGTAATTGATAA
Stomorhina lunata genome assembly, chromosome: 4.
OW121743.1:20544808-20544827
ATCATACAAATACCGATATTCAATGGCATT20544808TACACAGAATGGCCGGATTTCTTTTCAATGTTTGAAACAGTAATTGATAA
Stomorhina lunata genome assembly, chromosome: 5.
OW121744.1:53848023-53848042
ATCATACAAATACCGATATTCAATGGCATT53848023TACACAGAATGGCCGGATTTCTTTTCAATGTTTGAAACAGTAATTGATAA
Merzomyia westermanni genome assembly, chromosome: 4.
OX465291.1:87676312-87676331
GAACGTAAGTTACCGTCATTTGGAGGAACA87676312TACACAGAATGGCCGGATTTTTACGGCATGTTTCAAACTATTGTCCACAA
Linnaemya tessellans genome assembly, chromosome: 2.
OX637533.1:45452158-45452177
GTCATACAAATCCCAACATTCAATGGAGTA45452158TACACAGAATGGCCGGATTTCTTTTCAATGTTTGAAACAGTTATTGGTGG
Linnaemya tessellans genome assembly, chromosome: 2.
OX637533.1:70552748-70552767
GTGATACAAATCCCAACATTCAATGGAGTA70552748TACACAGAATGGCCGGATTTCTTTTCAATGTTTGAAACCGTTATTGGTGG
Linnaemya tessellans genome assembly, chromosome: 3.
OX637534.1:44039378-44039397
GTCATACAAATCCCCACATTCAATGGAGTA44039378TACACAGAATGGCCGGATTTCTTTTCAATGTTTGAAACAGTTATTGGTGG
Linnaemya vulpina genome assembly, chromosome: 1.
OY776276.1:45429101-45429120
ATCATACAAATTCCAGCATTCAATGGAGTA45429101TACACAGAATGGCCGGATTTCTTTTCAGTGTTTGAAACAGTTATTGGTGG
Linnaemya vulpina genome assembly, chromosome: 5.
OY776280.1:52103553-52103572
ATCATACAAATTCCAACATTCAATGGAGTA52103553TACACAGAATGGCCGGATTTCTTTTCAATGTTTGAAACAGTTATTGGTGG
Linnaemya vulpina genome assembly, chromosome: 5.
OY776280.1:55994869-55994888
ATCATACAAATTCCAACATTCAATGGAGTA55994869TACACAGAATGGCCGGATTTCTTTTCAATGTTTGAAACAGTTATTGGTGG
Linnaemya vulpina genome assembly, chromosome: X.
OY776281.1:20359311-20359330
ATCATACAAATTCCAACATTCAATGGGGTA20359311TACACAGAATGGCCGGATTTCTTTTCAATGTTTGAAACAGTTATTGGTGG
Linnaemya vulpina genome assembly, chromosome: X.
OY776281.1:34899390-34899409
ATCATACAAATTCCAACATTCAATGGAGTA34899390TACACAGAATGGCCGGATTTCTTTTCAATGTTTGAAACAGTTTTGGTGGT

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/AAATCCGGCCATTCTGTGTA
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : AAATCCGGCCATTCTGTGTA | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.340 | 0.332 | search_plus_done; http://172.18.8.135:50400/match?q=AAATCCGGCCATTCTGTGTA&k=0&no_gap=0&offset=0&limit=50
0.391 | 0.051 | search_minus_done; http://172.18.8.135:50400/match?q=TACACAGAATGGCCGGATTT&k=0&no_gap=0&offset=0&limit=38
0.402 | 0.011 | cgi_end;

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