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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-03-24 10:15:55, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Sciurus carolinensis genome assembly, chromosome: 12.
LR738602.1:61566057-61566075
TGCATGGTTTGTGGGTCAGTGTAAAATGAG61566057AAATCCTGGAGGCCCTCTTTCAACGTGTATTCAGAATGTCAAGATGGCA
Nesoenas mayeri genome assembly, chromosome: 2.
OY720057.1:12511830-12511848
TAAATACATATAAAATAATCCTACCTCTTC12511830AAATCCTGGAGGCCCTCTTCTCTTGTATACAGTAATCTGTTCCTGTTCA
PV_GBb114H11.R PV_GBb Phaseolus vulgaris genomic 3', genomic survey sequence.
JY593809.1:624-642
TGCCAATGCTCCTGCACCTGCCCCAATTGC624AAATCCTGGAGGCCCTCTTGGCCTAGGACCTGCCCCAGGACCTGTCCCA
VUK114K03.F VUK Phaseolus vulgaris genomic 5', genomic survey sequence.
JY676048.1:429-447
TGCCAATGCTCCTGCACCTGCCCCAATTGC429AAATCCTGGAGGCCCTCTTGGCCTAGGACCTGCCCCAGGACCTGTCCCA
Vigna unguiculata subsp. unguiculata cultivar IT97K-499-35 clone BAC H035P21, *** SEQUENCING IN PROGRESS ***, 16 unordered pieces.
AC270895.1:109021-109039
TGCCAAAGCTCCTGCACCTGCCCCAATGGC109021AAATCCTGGAGGCCCTCTTGGCCTAGGACCTGCCCCAGATGATGATGAT
Vigna unguiculata subsp. unguiculata cultivar IT97K-499-35 clone BAC H027H24, *** SEQUENCING IN PROGRESS ***, 88 unordered pieces.
AC273987.1:81662-81680
TGCCAAAGCTCCTGCACCTGCCCCAATGGC81662AAATCCTGGAGGCCCTCTTGGCCTAGGACCTGCCCCAGATGATGATGAT
Vigna unguiculata cultivar Xiabao 2 chromosome Vu08.
CP039351.1:36040499-36040517
TGCCAAAGCTCCTGCACCTGCCCCAATGGC36040499AAATCCTGGAGGCCCTCTTGGCCTAGGACCTGCCCCAGATGATGATGAT
Vitis x doaniana cultivar PI 588149 chromosome 9.
CP128354.1:20593917-20593935
AAAAACATAGTGGAAAACTTACTCCCGGGA20593917AAATCCTGGAGGCCCTCTTTTCCTCTGGCTCCCTGTAAGTCTGTAACCT
Streptopelia turtur genome assembly, chromosome: 2.
LR594552.1:158379759-158379777
TGAACAGGAACAGATTACTGTATACAAGAG158379759AAGAGGGCCTCCAGGATTTGAAGAGGTAGGATTATTTTATATGTATTTA
UCRVU09_CCNT8382_b1 Cowpea UCR 707 Mixed Tissue and Conditions cDNA Library UCRVU09-1-2 Vigna unguiculata cDNA clone CCNT8382.b1, mRNA sequence.
FG927592.1:122-140
ATCATCATCATCTGGGGCAGGTCCTAGGCC122AAGAGGGCCTCCAGGATTTGCCATTGGGGCAGGTGCAGGAGCTTTGGCA
454PCS0093611 Scarlet Runner Bean globular-stage suspensor region Phaseolus coccineus cDNA, mRNA sequence.
GD465910.1:42-60
TGGGACAGGTCCTGGGGCAGGTCCTAGGCC42AAGAGGGCCTCCAGGATTTGCAATTGGGGCAGGTGCAGGAGCATTGGCA
Vigna angularis mRNA, clone: VES10K07.
HX946101.1:584-602
ATCATCATCATCTGGGGCAGGTCCTAGGCC584AAGAGGGCCTCCAGGATTTGCAATTGGGGCAGGTGCAGGAGCATTGGCA
PV_GBa0020C11.r PV_GBa Phaseolus vulgaris genomic clone PV_GBa0020C11 3', genomic survey sequence.
EI428924.1:288-306
TGGGACAGGTCCTGGGGCAGGTCCTAGGCC288AAGAGGGCCTCCAGGATTTGCAATTGGGGCAGGTGCAGGAGCATTGGCA
PV_GBa0024F24.f PV_GBa Phaseolus vulgaris genomic clone PV_GBa0024F24 5', genomic survey sequence.
EI432066.1:405-423
TGGGACAGGTCCTGGGGCAGGTCCTAGGCC405AAGAGGGCCTCCAGGATTTGCAATTGGGGCAGGTGCAGGAGCATTGGCA
VUK234D20.F VUK Phaseolus vulgaris genomic 5', genomic survey sequence.
JY698502.1:448-466
TGGGACAGGTCCTGGGGCAGGTCCTAGGCC448AAGAGGGCCTCCAGGATTTGCAATTGGGGCAGGTGCAGGAGCATTGGCA
Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari.
AP015036.1:15738751-15738769
ATCATCATCATCTGGGGCAGGTCCTAGGCC15738751AAGAGGGCCTCCAGGATTTGCAATTGGGGCAGGTGCAGGAGCATTGGCA

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/AAATCCTGGAGGCCCTCTT
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : AAATCCTGGAGGCCCTCTT | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.562 | 0.554 | search_plus_done; http://172.18.8.135:50400/match?q=AAATCCTGGAGGCCCTCTT&k=0&no_gap=0&offset=0&limit=50
1.050 | 0.487 | search_minus_done; http://172.18.8.135:50400/match?q=AAGAGGGCCTCCAGGATTT&k=0&no_gap=0&offset=0&limit=42
1.055 | 0.005 | cgi_end;

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