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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-03 14:37:12, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Trifolium pratense cDNA clone:RCE01603.
BB903763.1:202-222
CCCAACTGAGGCAGAGTTGCAGGATATGAT202AAATGAAGTTGATGCTGACGGCAACGGTACCATTGATTTCCCAGAGTTCCT
Trifolium pratense cDNA clone:RCE28283.
BB922037.1:208-228
CCCAACTGAGGCAGAGTTGCAGGATATGAT208AAATGAAGTTGATGCTGACGGCAATGGTACCATTGATTTCCCAGAGTTCCT
Trifolium pratense cDNA clone:RCE32454.
BB924184.1:219-239
CCCAACTGAGGCAGAGTTGCAGGATATGAT219AAATGAAGTTGATGCTGACGGCAATGGTACCATTGATTTCCCAGAGTTCCT
Euphorbia tirucalli mRNA, clone: ETC100D02, 5' end.
BP959519.1:250-270
CCCAACAGAGGCAGAGCTGCAGGATATGAT250AAATGAAGTTGATGCTGACGGCAATGGAACCATAGATTTCCCTGAGTTTCT
Euphorbia tirucalli mRNA, clone: ETC005B12, 5' end.
BP959520.1:198-218
CCCAACAGAGGCAGAGCTGCAGGATATGAT198AAATGAAGTTGATGCTGACGGCAATGGAACCATAGATTTCCCTGAGTTTCT
Euphorbia tirucalli mRNA, clone: ETC093B07, 5' end.
BP959521.1:182-202
CCCAACAGAGGCAGAGCTGCAGGATATGAT182AAATGAAGTTGATGCTGACGGCAATGGAACCATAGATTTCCCTGAGTTTCT
Euphorbia tirucalli mRNA, clone: ETC090B10, 5' end.
BP959522.1:184-204
CCCAACAGAGGCAGAGCTGCAGGATATGAT184AAATGAAGTTGATGCTGACGGCAATGGAACCATAGATTTCCCTGAGTTTCT
Euphorbia tirucalli mRNA, clone: ETC053A07, 5' end.
BP959523.1:170-190
CCCAACAGAGGCAGAGCTGCAGGATATGAT170AAATGAAGTTGATGCTGACGGCAATGGAACCATAGATTTCCCTGAGTTTCT
Euphorbia tirucalli mRNA, clone: ETC029H03, 5' end.
BP959524.1:190-210
CCCAACAGAGGCAGAGCTGCAGGATATGAT190AAATGAAGTTGATGCTGACGGCAATGGAACCATAGATTTCCCTGAGTTTCT
Euphorbia tirucalli mRNA, clone: ETC063H03, 5' end.
BP959525.1:183-203
CCCAACAGAGGCAGAGCTGCAGGATATGAT183AAATGAAGTTGATGCTGACGGCAATGGAACCATAGATTTCCCTGAGTTTCT
Euphorbia tirucalli mRNA, clone: ETC114C03, 5' end.
BP959526.1:166-186
CCCAACAGAGGCAGAGCTGCAGGATATGAT166AAATGAAGTTGATGCTGACGGCAATGGAACCATAGATTTCCCTGAGTTTCT
Euphorbia tirucalli mRNA, clone: ETC045E07, 5' end.
BP959527.1:158-178
CCCAACAGAGGCAGAGCTGCAGGATATGAT158AAATGAAGTTGATGCTGACGGCAATGGAACCATAGATTTCCCTGAGTTTCT
HTAM-aaa36f04.b1 Heterorhabditis_bacteriophora_EST_Infective_Juvenile_pSMART Heterorhabditis bacteriophora cDNA similar to ref|NP_503386.1| Calmodulin CMD-1 (16.8 kD) (cmd-1) [Caenorhabditis elegans]
FK809491.1:235-255
TCCTACTGAAGCTGAGCTGCAAGACATGAT235AAATGAAGTTGATGCTGACGGTAATGGAACGATCGATTTTTTTGAATTTTT
Trifolium repens mRNA, clone: WCC18e06_083, unspecified EST.
FY460333.1:210-230
CCCAACTGAGGCAGAATTGCAGGATATGAT210AAATGAAGTTGATGCTGACGGTAACGGTACCATTGATTTCCCAGAGTTCCT
Trifolium repens mRNA, clone: WCC25p20_032, unspecified EST.
FY463097.1:206-226
CCCAACTGAGGCAGAGTTGCAGGATATGAT206AAATGAAGTTGATGCTGACGGCAACGGTACCATTGATTTCCCAGAGTTCCT
Euphorbia tirucalli mRNA, clone: TU001N01-A-010_P04, 5'-end sequence.
HX987914.1:243-263
CCCAACAGAGGCAGAGCTGCAGGATATGAT243AAATGAAGTTGATGCTGACGGCAATGGAACCATAGATTTCCCTGAGTTTCT
Euphorbia tirucalli mRNA, clone: TU001N01-A-014_E19, 5'-end sequence.
HX989102.1:187-207
CCCAACAGAGGCAGAGCTGCAGGATATGAT187AAATGAAGTTGATGCTGACGGCAATGGAACCATAGATTTCCCTGAGTTTCT
OR_ABa0122A15.r OR_ABa Oryza ridleyi genomic clone OR_ABa0122A15 3', genomic survey sequence.
DX238847.1:662-682
AGTATGACCTAAAAATCATCGACAAGGACA662AAATGAAGTTGATGCTGACGGCATTCAAGGGGAGAAGCAGTTTTGACAAGG
Trifolium pratense cDNA clone:RCE27795.
BB921610.1:519-539
AGGAACTCTGGGAAATCAATGGTACCATTG519CCGTCAGCATCAACTTCATTTATCATATCCTGCAACTCTGCCTCAGTTGGG
OR_ABa0091M05.r OR_ABa Oryza ridleyi genomic clone OR_ABa0091M05 3', genomic survey sequence.
DX216845.1:277-297
CCTTGTCAAAACTGCTTCTCCCCTTGAATG277CCGTCAGCATCAACTTCATTTTGTCCTTGTCGATGATTTTTAGGTCATACT
Trifolium repens isolate ACLI19 chromosome 03_Occ.
CP125840.1:11907713-11907733
AGGAACTCTGGGAAATCAATGGTACCGTTA11907713CCGTCAGCATCAACTTCATTTATCATATCCTGCAACTCTGCCTCAGTTGGG
Trifolium repens isolate ACLI19 chromosome 03_Pall.
CP125841.1:13759110-13759130
AGGAACTCTGGGAAATCAATGGTACCGTTG13759110CCGTCAGCATCAACTTCATTTATCATATCCTGCAACTCTGCCTCAGTTGGG
Trifolium fragiferum genome assembly, chromosome: 6.
OX940794.1:14679479-14679499
AGGAACTCTGGGAAATCAATGGTACCATTG14679479CCGTCAGCATCAACTTCATTTATCATATCCTGTAACTCTGCCTCAGTTGGG
Meconema thalassinum genome assembly, chromosome: 1_1.
OX336388.2:311433589-311433609
CTGGCTTCAATTTTGGACCTTGTAGCTTTT311433589CCGTCAGCATCAACTTCATTTTCAAAAGTTGCGTTTCATCATAGTCTGCCT
Ascidiella aspersa genome assembly, chromosome: 6.
OZ004612.1:23859515-23859535
AGGAATTCCGGAAAGTCAATGGTTCCATTT23859515CCGTCAGCATCAACTTCATTTATCATGTCCTAAATAGATGCTCAATATCAT

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/AAATGAAGTTGATGCTGACGG
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : AAATGAAGTTGATGCTGACGG | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.896 | 0.887 | search_plus_done; http://172.18.8.135:50400/match?q=AAATGAAGTTGATGCTGACGG&k=0&no_gap=0&offset=0&limit=50
1.040 | 0.144 | search_minus_done; http://172.18.8.135:50400/match?q=CCGTCAGCATCAACTTCATTT&k=0&no_gap=0&offset=0&limit=32
1.044 | 0.005 | cgi_end;

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