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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-12 20:48:48, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Barbus barbus genome assembly, chromosome: 1.
OW387168.1:5310715-5310733
ATATGTAAATCACTCAACTAATTTGGTTTT5310715AAATGCAGCGTTTTAGGGGTCGGAGTATTTCACACCTCTTTCAATTGTT
Sequence 48738 from patent US 9012723.
HK612392.1:13-31
ATGGTGGCTACA13AAATGCAGCGTTTTAGGGGCCAAGTGTCCCGCCAAAGAGTTAAGGCTTA
TSA: Ictalurus punctatus vet_k45:314751 mRNA sequence.
JT124190.1:121-139
TTCCTGGAGATTTAAAATGTAATATTTGTT121AAATGCAGCGTTTTAGGGGAAGTTCAGAACACAGTGGCCGGCTTTAGTT
TSA: Ictalurus punctatus aby_k39:1648253 mRNA sequence.
JT414295.1:88-106
TTCCTGGAGATTTAAAATGTAATATTTGTT88AAATGCAGCGTTTTAGGGGAAGTTCAGAACACAGTGGCCGGCTTTAGTT
Brassica napus cultivar Xiang5A chromosome 3.
CP123878.1:21660457-21660475
CCATGGACGCGGACGATTAAGCAAACAAAA21660457AAATGCAGCGTTTTAGGGGCTCTAGCTAGATGATGATTATGGTTGCTCG
Glycine max cultivar Williams 82 chromosome 18.
CP126443.1:8300486-8300504
ACTACGTTGTGACCGGAGATGGTGGCTACA8300486AAATGCAGCGTTTTAGGGGCCAAGTGTCCCGCCAAAGAGTTAAGGCTTA
Brassica napus genome assembly, chromosome: A03.
HG994357.1:21649132-21649150
CCATGGACGCGGACGATTAAGCAAACAAAA21649132AAATGCAGCGTTTTAGGGGCTCTAGCTAGATGATGATTATGGTTGCTCG
Brassica napus genome assembly, chromosome: C07.
HG994371.1:44770309-44770327
ATGACGTGGACGATTAAGCAAACAAACAAA44770309AAATGCAGCGTTTTAGGGGCTCTAGATGATAATTATGGTTGCTCGAGCG
Brassica rapa genome, scaffold: A03.
LR031572.1:21463117-21463135
CCATGGACGCGGACGATTAAGCAAACAAAA21463117AAATGCAGCGTTTTAGGGGCTCTAGCTAGATGATTATGGTTGCTCGAGC
Brassica rapa genome assembly, chromosome: A03.
LS974619.2:21591178-21591196
CCATGGACGCGGACGATTAAGCAAACAAAA21591178AAATGCAGCGTTTTAGGGGCTCTAGCTAGATGATTATGGTTGCTCGAGC
Sepia lycidas genome assembly, chromosome: 30.
OZ010600.1:97252093-97252111
TTAGAATTTGGTTCATTCAGCAGTTAATAG97252093AAATGCAGCGTTTTAGGGGAATGTTAAAGTTCTAGGCATAAAAATTTTT
Erpetoichthys calabaricus genome assembly, chromosome: 17.
LR536448.2:2709996-2710014
ACACATAGTTAAGGTGTCTCCTGTTGGGGT2709996CCCCTAAAACGCTGCATTTGGCCCCTCAATGTGGCGGTGAAGCAGACGG
Podarcis lilfordi genome assembly, chromosome: 10.
OX395135.1:8855040-8855058
CTTGCGTTTCATTACCGCCTTTGCCTGTCA8855040CCCCTAAAACGCTGCATTTCCCTCCCGGTTTGCAAAGAGATTAGAGGGG
Brassica oleracea var. viridis mRNA, clone: KALE-092D18, 5' end sequence.
DK490822.1:174-192
CGCTCGAGCAACCATAATTATCATCTAGAG174CCCCTAAAACGCTGCATTTTTTTGTTTGTTTGCTTAATCGTCCACGTCA
40JKME7D_UP_026_D02_24MAY2004_010 40JKME7D Brassica napus cDNA 5', mRNA sequence.
DY016894.1:148-166
GCTCGAGCAACCATAATCATCTAGCTAGAG148CCCCTAAAACGCTGCATTTTTTTGTTTGCTTAATCGTCCGCGTCCATGG
13JKBNM2_UP_064_G06_1OCT2007_036 13JKBNM2 Brassica napus cDNA 5', mRNA sequence.
GR439359.1:142-160
GCTCGAGCAACCATAATCATCTAGCTAGAG142CCCCTAAAACGCTGCATTTTTTTGTTTGCTTAATCGTCCGCGTCCATGG
BNAPO1GH_T3_030_H12_15JUN2007_082 BNAPO1GH Brassica napus cDNA 5', mRNA sequence.
GR452911.1:219-237
GCTCGAGCAACCATAATCATCTAGCTAGAG219CCCCTAAAACGCTGCATTTTTTTGTTTGCTTAATCGTCCGCGTCCATGG
BNAPO2GH_T3_007_E09_19JUN2007_071 BNAPO2GH Brassica napus cDNA 5', mRNA sequence.
GR453477.1:123-141
GCTCGAGCAACCATAATCATCTAGCTAGAG123CCCCTAAAACGCTGCATTTTTTTGTTTGCTTAATCGTCCGCGTCCATGG
BNAPO2GH_T3_015_A04_19JUN2007_032 BNAPO2GH Brassica napus cDNA 5', mRNA sequence.
GR454165.1:126-144
GCTCGAGCAACCATAATCATCTAGCTAGAG126CCCCTAAAACGCTGCATTTTTTTGTTTGCTTAATCGTCCGCGTCCATGG
BNAPO2GH_T3_018_H02_20JUN2007_002 BNAPO2GH Brassica napus cDNA 5', mRNA sequence.
GR454522.1:126-144
GCTCGAGCAACCATAATCATCTAGCTAGAG126CCCCTAAAACGCTGCATTTTTTTGTTTGCTTAATCGTCCGCGTCCATGG
BOGOA88TF BOGO Brassica oleracea genomic clone BOGOA88, genomic survey sequence.
BH537114.1:656-674
CGCTCGAGCAACCATAATTATCATCTAGAG656CCCCTAAAACGCTGCATTTTTTTTTTGTTTGCTTAATCGTCCACGTCAT
Brassica rapa subsp. pekinensis clone KBrH051D07, complete sequence.
FP340646.1:72192-72210
GCTCGAGCAACCATAATCATCTAGCTAGAG72192CCCCTAAAACGCTGCATTTTTTTGTTTGCTTAATCGTCCGCGTCCATGG
Gossypium rotundifolium isolate GPK201 chromosome 13.
CP106734.1:161269241-161269259
TGGAGGGACTAAAGGGGAAAATATCCCCTC161269241CCCCTAAAACGCTGCATTTTACAAGGGACCCAATTGAAATCTCAATAAA
Brassica napus cultivar Xiang5A chromosome 19.
CP123894.1:11025292-11025310
CGCTCGAGCAACCATAATTATCATCTAGAG11025292CCCCTAAAACGCTGCATTTTTTGTTTGTTTGCTTAATCGTCCACGTCAT
Blastomussa wellsi genome assembly, chromosome: 6.
OX393566.1:1107449-1107467
AATCCTTGCAGTCTTGCATCTGATAACGGT1107449CCCCTAAAACGCTGCATTTTTTTCTGCTTTTGTTTGGCTCCTAGCAAGG
Oegoconia quadripuncta genome assembly, chromosome: 7.
OX438748.1:22359848-22359866
ATTTACTTGAATGGTCATTTCATAGGGTAT22359848CCCCTAAAACGCTGCATTTTAAAAATACTAAAACTGTTGAACATTGACA
Sepiola atlantica genome assembly, chromosome: 20.
OY744534.1:49834272-49834290
ATGATTATACGCAATCAAAGATTTAATAGA49834272CCCCTAAAACGCTGCATTTTCATGGATGACACTCATTAGTGCCATATGG

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/AAATGCAGCGTTTTAGGGG
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : AAATGCAGCGTTTTAGGGG | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.396 | 0.387 | search_plus_done; http://172.18.8.135:50400/match?q=AAATGCAGCGTTTTAGGGG&k=0&no_gap=0&offset=0&limit=50
1.105 | 0.710 | search_minus_done; http://172.18.8.135:50400/match?q=CCCCTAAAACGCTGCATTT&k=0&no_gap=0&offset=0&limit=39
1.116 | 0.010 | cgi_end;

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