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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-05 21:00:29, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Sarcophilus harrisii genome assembly, chromosome: 2.
LR735555.1:342353787-342353806
GTTATTTTCTCTGCCTATCTATCATGTCTG342353787AAATGCTCTTCTTCCTCCACTAGGACTCCTGGTTTCCTTTTGGCCCCAAC
Sarcophilus harrisii genome assembly, chromosome: 3.
LR735556.1:164342813-164342832
ACATTTTTTCTTGGCTGTCCTCAATGCCTT164342813AAATGCTCTTCTTCCTCCACTCTGACTACGGACTTCCCTGATTTCCTTTA
Silurus aristotelis genome assembly, chromosome: 19.
OX327771.1:23385579-23385598
ATTGTGGCGTTTTTTTCCCATTGTGGCCCT23385579AAATGCTCTTCTTCCTCCACCGGCTTTCTAAATCTGCTGCATCAGATTTT
39RDBRT_UP_042_E11_21JUL2004_087 Brassica rapa 39RDBRT Brassica rapa cDNA 5', mRNA sequence.
CX272589.1:13-32
GAGTCTCTCTAT13AAATGCTCTTCTTCCTCCACATCGCCTCCTCCTCCTCCTAGAAAGCAGAG
TSA: Phalaenopsis aphrodite PATC101658 mRNA sequence.
JI743010.1:77-96
TTTAGGGACACCTTCACTACATCAGAGTGC77AAATGCTCTTCTTCCTCCACTACATATTCCTTTGATTCCACCCCATCTCC
ljr30a02.b1 B.oleracea002 Brassica oleracea genomic, genomic survey sequence.
BZ043686.1:242-261
ACACGAACATGCGGTTTCGAGTCTCTCTAT242AAATGCTCTTCTTCCTCCACATCGCCTCCTCGAAAGCAGAAGAGAGAGAG
Brassica napus cultivar Xiang5A chromosome 7.
CP123882.1:8939772-8939791
GACACGAACATGCGCTTCGAGTCTCTCTAT8939772AAATGCTCTTCTTCCTCCACATCGCCTCCTCCTCCTCCTAGAAAGCAGAG
Brassica napus cultivar Xiang5A chromosome 18.
CP123893.1:4672405-4672424
GACACGAACATGCGGTTCGAGTCTCTCTAT4672405AAATGCTCTTCTTCCTCCACATCGCCTCCTCGAAAGCAGAAGAGAGAAAG
Cochlearia excelsa genome assembly, chromosome: 2.
OY748328.1:43672641-43672660
CAAGGTTCTCTCTTTCTCTGACCTCTCTAT43672641AAATGCTCTTCTTCCTCCACATCGCCTCCTCCTCTTCTCAATAAGTCCCT
Crassostrea gigas strain QD chromosome 6.
CP048844.1:46885122-46885141
CTCAATTCAATTTTCTTCAGCTCAGCAATC46885122AAATGCTCTTCTTCCTCCACCTAGGAAATTCATTGTTATTACATTCAAAG
Crassostrea gigas genome assembly, linkage group: LG10.
LR761643.1:47866666-47866685
CTCAATTCAATCTTCTTCAGCTCAGCAATC47866666AAATGCTCTTCTTCCTCCACCTAGGAAATTCATTGTTATTACATTCAAAG
Hypena proboscidalis genome assembly, chromosome: 5.
LR990131.1:16905842-16905861
GCAACAAAGACCATCAACAGACAAACGGTC16905842AAATGCTCTTCTTCCTCCACATCTCCTTTCTGTTGGCGCAAAGCCGACGC
Magallana gigas genome assembly, chromosome: 7.
OY970751.1:44579751-44579770
CTCAATTCAATCTTCTTCAGCTCAGCAATC44579751AAATGCTCTTCTTCCTCCACCTAGGAAATTCATTGTTATTACATTCAAAG
Arvicola amphibius genome assembly, chromosome: 6.
LR862385.2:100411430-100411449
GAGTGAGTTTCTTGATGGTGACGGCACTGA100411430GTGGAGGAAGAAGAGCATTTGTTGTCTTTAGTGATTCTTTGGCTGCCTTC
Chionomys nivalis genome assembly, chromosome: 13.
OX465461.1:19577027-19577046
CAGGTATAGGAGCTTGTACAATGGCACTGA19577027GTGGAGGAAGAAGAGCATTTGTTTCTTTAGTGATTCTTTGGCTGCCTTCT
Rattus norvegicus mRNA 5-prime sequence from clone LA0ACA44YK09 (LA0ACA44YK09CM1).
FO799771.1:610-629
CTACTGAACTTCAGTGACTCAGACACCTCT610GTGGAGGAAGAAGAGCATTTCACTCCCTGCCAGAT
Brassica rapa subsp. pekinensis clone KBrB112K04, complete sequence.
FP340381.1:83207-83226
CTCTGCTTTTTAGGAGGAGGAGGAGGCGAT83207GTGGAGGAAGAAGAGCATTTATAGAGAGACTCGAAGCGCATGTTCGTGTC
Brassica napus genome assembly, chromosome: A08.
HG994362.1:17512722-17512741
CTCTGCTTTCTAGGAGGAGGAGGAGGCGAT17512722GTGGAGGAAGAAGAGCATTTATAGAGAGACTCGAAGCGCATGTTCGTGTC
Brassica napus genome assembly, chromosome: C03.
HG994367.1:69530121-69530140
CTCTCTCTCTTCTGCTTTCGAGGAGGCGAT69530121GTGGAGGAAGAAGAGCATTTATAGAGAGACTCGAAACCGCATGTTCGTGT
Brassica rapa genome, scaffold: A08.
LR031575.1:16496813-16496832
CTCTGCTTTCTAGGAGGAGGAGGAGGCGAT16496813GTGGAGGAAGAAGAGCATTTATAGAGAGACTCGAAGCGCATGTTCGTGTC
Brassica oleracea HDEM genome, scaffold: C3.
LR031872.1:69284637-69284656
CTCTCTCTCTTCTGCTTTCGAGGAGGCGAT69284637GTGGAGGAAGAAGAGCATTTATAGAGAGACTCGAAACCGCATGTTCGTGT
Brassica rapa genome assembly, chromosome: A08.
LS974624.2:22321276-22321295
CTCTGCTTTCTAGGAGGAGGAGGAGGCGAT22321276GTGGAGGAAGAAGAGCATTTATAGAGAGACTCGAAGCGCATGTTCGTGTC
Thysanoteuthis rhombus genome assembly, chromosome: 11.
OY735208.1:7808074-7808093
AATGTGTCCACCACAAGTGGTGGTAGAGAT7808074GTGGAGGAAGAAGAGCATTTGTCTTCCTTTGAGTCAGTTGATTCTCCTAC

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/AAATGCTCTTCTTCCTCCAC
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : AAATGCTCTTCTTCCTCCAC | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.409 | 0.400 | search_plus_done; http://172.18.8.135:50400/match?q=AAATGCTCTTCTTCCTCCAC&k=0&no_gap=0&offset=0&limit=50
0.617 | 0.208 | search_minus_done; http://172.18.8.135:50400/match?q=GTGGAGGAAGAAGAGCATTT&k=0&no_gap=0&offset=0&limit=37
0.624 | 0.007 | cgi_end;

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