GGGenome Help | English

データベース：
 

ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-13 01:33:43, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

TSA: Brassica rapa subsp. pekinensis RNA, contig: CF3_6384.
FX698880.1:1217-1235
GCGGCGAGAGAAGGTTGGAGGGCGTAGGTG1217AACAATTGGTGACGATGTGCTGCCATTCGGATTTTGATTGAAAACCCTA
TSA: Brassica rapa x Raphanus sativus RNA, contig: BB3_2494.
FX732733.1:1223-1241
GCGGCGAGAGAAGGTTGGAGGGCGTAGGTG1223AACAATTGGTGACGATGTGCTGCCATTCGGATTTTGATTGAAAACCCTA
TSA: Brassica rapa x Raphanus sativus RNA, contig: BB3_365.
FX733378.1:1795-1813
GCGGCGAGAGAAGGTTGGAGGGCGTAGGTG1795AACAATTGGTGACGATGTGATGCCATTCTGGGATTGAAAACCCTAAAGA
BOMDG06TR BO_2_3_KB Brassica oleracea genomic clone BOMDG06, genomic survey sequence.
BH655918.1:664-682
GCGGCGAAAGAAGGTTGGAGGGCGTATGTG664AACAATTGGTGACGATGTGCTGCCATTCGGATTTGTGATTGAAAACCCT
KBrH100C13F Brassica rapa BAC library KBrH Brassica rapa genomic clone KBrH100C13, genomic survey sequence.
DU113382.1:305-323
GCGGCGAGAGAAGGTTGGAGGGCGTAGGTG305AACAATTGGTGACGATGTGCTGCCATTCGGATTTTGATTGAAAACCCTA
BOT01-35P19TR BOT01 Brassica oleracea genomic clone BOT01-35P19, genomic survey sequence.
FI700191.1:390-408
GCGGCGAGAGAAGGTTGGAGGGCGTATGTG390AACAATTGGTGACGATGTGCTGCCATTCGGATTTGTGATTGAAAACCCT
BOT01-57J10TR BOT01 Brassica oleracea genomic clone BOT01-57J10, genomic survey sequence.
FI716890.1:647-665
GCGGCGAGAGAAGGTTGGAGGGCGTATGTG647AACAATTGGTGACGATGTGCTGCCATTCGGATTTGTGATTGAAAACCCT
BOT01-87P13TF BOT01 Brassica oleracea genomic clone BOT01-87P13, genomic survey sequence.
FI737384.1:143-161
GCGGCGAGAGAAGGTTGGAGGGCGTATGTG143AACAATTGGTGACGATGTGCTGCCATTCGGATTTGTGATTGAAAACCCT
Brassica napus cultivar Xiang5A chromosome 11.
CP123886.1:6582692-6582710
GCGGCGAGAGAAGGTTGGAGGGCGTATGTG6582692AACAATTGGTGACGATGTGCTGCCATTCGGATTTGTGATTGAAAACCCT
Raphanus sativus genome assembly, chromosome: 5.
OY743211.1:4824367-4824385
GCGGCGAGAGAAGGTTGGAGGGCGTAGGTG4824367AACAATTGGTGACGATGTGATGCCATTCTGGGATTGAAAACCCTAAAGA
Draba incana genome assembly, chromosome: 6.
OY755207.1:10971315-10971333
ACGGCGGAAGAAGGTTGAAGCGCGTAGCTA10971315AACAATTGGTGACGATGTGCCATTCGATTTGAAGAAACCCTAAAAGAGG
Parashewanella spongiae strain HJ039 chromosome, complete genome.
CP037952.1:5171741-5171759
GTCTGAATCCAATCCCGACGGTTATCCACT5171741AACAATTGGTGACGATGTGACCGTGGGCCACAAAGCCATGCTGCATGGT
Acrobasis repandana genome assembly, chromosome: 15.
OY756229.1:20823728-20823746
AGAAAAGGCTGATTGTTTATTGATTGTTAA20823728AACAATTGGTGACGATGTGATTTGATTTGCAAATAGAGTGTGTTTAGTA
Raja brachyura genome assembly, chromosome: 12.
OY740792.1:27664716-27664734
TCAGTCACCATGAACTGGTGGTCTTTTCAA27664716CACATCGTCACCAATTGTTTCATCACATACAAATGATCGGAGATGGTAT
BN25.059P03F011129 BN25 Brassica napus cDNA clone BN25059P03, mRNA sequence.
CD825168.1:69-87
AGGGTTTTCAATCACAAATCCGAATGGCAG69CACATCGTCACCAATTGTTCACATACGCCCTCCAACCTTCTCTCGCCGC
BN25.068F02F020125 BN25 Brassica napus cDNA clone BN25068F02, mRNA sequence.
CD827681.1:91-109
TAGGGTTTTCAATCAAAATCCGAATGGCAG91CACATCGTCACCAATTGTTCACCTACGCCCTCCAACCTTCTCTCGCCGC
38RDBRM_UP_022_H04_10JUL2004_018 Brassica rapa 38RDBRM Brassica rapa cDNA 5', mRNA sequence.
CX267494.1:93-111
TAGGGTTTTCAATCAAAATCCGAATGGCAG93CACATCGTCACCAATTGTTCACCTACGCCCTCCAACCTTCTCTCGCCGC
Brassica oleracea var. viridis mRNA, clone: KALE-027K07, 5' end sequence.
DK466111.1:111-129
AGGGTTTTCAATCACAAATCCGAATGGCAG111CACATCGTCACCAATTGTTCACATACGCCCTCCAACCTTCTCTCGCCGC
Brassica oleracea var. viridis mRNA, clone: KALE-055G07, 5' end sequence.
DK476716.1:22-40
GAATCAAAATCCGAATGGCAG22CACATCGTCACCAATTGTTCACCTACGCCCTCCAACCTTCTCTCGCCGC
Brassica oleracea var. viridis mRNA, clone: KALE-058A22, 5' end sequence.
DK477738.1:63-81
TAGGGTTTTCAATCAAAATCCGAATGGCAG63CACATCGTCACCAATTGTTCACCTACGCCCTCCAACCTTCTCTCGCCGC
Brassica oleracea var. viridis mRNA, clone: KALE-144K11, 5' end sequence.
DK510859.1:115-133
AGGGTTTTCAATCACAAATCCGAATGGCAG115CACATCGTCACCAATTGTTCACATACGCCCTCCAACCTTCTCTCGCCGC
32ETGS24_UP_012_E05_09FEB2005_039 Brassica napus 32ETGS24 Brassica napus cDNA 5', mRNA sequence.
EE426501.1:95-113
AGGGTTTTCAATCACAAATCCGAATGGCAG95CACATCGTCACCAATTGTTCACATACGCCCTCCAACCTTCTCTCGCCGC
BNZB_RP_012_C11_26APR2004_091 Brassica napus BNZB Brassica napus cDNA 5', mRNA sequence.
EE557164.1:278-296
TAGGGTTTTCAATCAAAATCCGAATGGCAG278CACATCGTCACCAATTGTTCACCTACGCCCTCCAACCTTCTCTCGCCGC
EST2639 3-9 DAP Brassica Napus seed cDNA library Brassica napus cDNA clone B110A061, mRNA sequence.
EL625133.1:136-154
TATGGTTTCAATCACAAATCCGAATGGCAG136CACATCGTCACCAATTGTTCACATACGCCCTCCAACCTTCTCTCGCCGC
BNAEN1GH_UP_056_B09_21JUL2006_077 Brassica napus BNAEN1GH Brassica napus cDNA 5', mRNA sequence.
ES990509.1:68-86
AGGGTTTTCAATCACAAATCCGAATGGCAG68CACATCGTCACCAATTGTTCACATACGCCCTCCAACCTTCTCTCGCCGC
0118124 Brassica napus Root library Brassica napus cDNA, mRNA sequence.
EV112812.1:128-146
AGGGTTTTCAATCACAAATCCGAATGGCAG128CACATCGTCACCAATTGTTCACATACGCCCTCCAACCTTCTCTCGCCGC
0120207 Brassica napus Root library Brassica napus cDNA, mRNA sequence.
EV114895.1:127-145
AGGGTTTTCAATCACAAATCCGAATGGCAG127CACATCGTCACCAATTGTTCACATACGCCCTCCAACCTTCTCTCGCCGC
Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB039A19, complete sequence.
AC189335.2:109588-109606
TAGGGTTTTCAATCAAAATCCGAATGGCAG109588CACATCGTCACCAATTGTTCACCTACGCCCTCCAACCTTCTCTCGCCGC
Brassica napus cultivar Xiang5A chromosome 17.
CP123892.1:40740656-40740674
TAGGGTTTTCAATCAAAATCCGAATGGCAG40740656CACATCGTCACCAATTGTTCACCTACGCCCTCCAACCTTCTCTCGCCGC
Brassica napus genome assembly, chromosome: A05.
HG994359.1:36752644-36752662
TAGGGTTTTCAATCAAAATCCGAATGGCAG36752644CACATCGTCACCAATTGTTCACCTACGCCCTCCAACCTTCTCTCGCCGC
Brassica napus genome assembly, chromosome: C05.
HG994369.1:51183083-51183101
AGGGTTTTCAATCACAAATCCGAATGGCAG51183083CACATCGTCACCAATTGTTCACATACGCCCTCCAACCTTCTCTCGCCGC
Brassica rapa genome, scaffold: A05.
LR031570.1:42489588-42489606
TAGGGTTTCCAATCAAAATCCGAATGGCAG42489588CACATCGTCACCAATTGTTCACCTACGCCCTCCAACCTTCTCTCGCCGC
Brassica oleracea HDEM genome, scaffold: C5.
LR031877.1:49042060-49042078
TAGGGTTTTCAATCAAAATCCGAATGGCAG49042060CACATCGTCACCAATTGTTCACCTACGCCCTCCAACCTTCTCTCGCCGC
Raphanus sativus genome assembly, chromosome: 4.
LR778313.1:39208584-39208602
TCTTTAGGGTTTTCAATCCCAGAATGGCAT39208584CACATCGTCACCAATTGTTCACCTACGCCCTCCAACCTTCTCTCGCCGC
Brassica rapa genome assembly, chromosome: A05.
LS974621.2:39176918-39176936
TAGGGTTTCCAATCAAAATCCGAATGGCAG39176918CACATCGTCACCAATTGTTCACCTACGCCCTCCAACCTTCTCTCGCCGC
Ballota nigra genome assembly, chromosome: 10.
OX344729.1:47077263-47077281
CGTCACAAATTTTTTTTTTTCATGATGTTA47077263CACATCGTCACCAATTGTTATGAGTATCATCACTAAAGTTTATTGACAC
Diabrotica virgifera virgifera genome assembly, chromosome: 1.
OU830624.1:256112769-256112787
GTTGGGTTAGAGAATTTGGCGAAGTTAGTC256112769CACATCGTCACCAATTGTTTTATCGAAGTTTTATCTTCGTCCTTCAGAT

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/AACAATTGGTGACGATGTG
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : AACAATTGGTGACGATGTG | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.491 | 0.482 | search_plus_done; http://172.18.8.135:50400/match?q=AACAATTGGTGACGATGTG&k=0&no_gap=0&offset=0&limit=50
1.312 | 0.821 | search_minus_done; http://172.18.8.135:50400/match?q=CACATCGTCACCAATTGTT&k=0&no_gap=0&offset=0&limit=37
1.328 | 0.016 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).