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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-13 05:21:05, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Brassica rapa subsp. pekinensis, pooled multiple clones, WORKING DRAFT SEQUENCE, 134 unordered pieces.
FJ789657.1:172312-172333
CCTTGAATATACCACCAGAAATATGTTTAC172312AACACTTGCAACTTCATTTTCCTTTTTATTGAGCTAACTATTNNNNNNNNNN
Brassica napus cultivar Xiang5A chromosome 1.
CP123876.1:30038355-30038376
CCTTGAATATACCACCAGAAATGTATTTAC30038355AACACTTGCAACTTCATTTTCCTTTTTATTGATCAAGCTATGAAGAGAGAGA
Brassica napus cultivar Xiang5A chromosome 18.
CP123893.1:23801538-23801559
CCTTGAATATACCACCAGAAATATATTTAC23801538AACACTTGCAACTTCATTTTCCTTTTTATTGAGCTAACTATGAAGAGAGAGA
Brassica napus genome assembly, chromosome: A02.
HG994356.1:24423771-24423792
CCTTGAATATACCACCAGAAATGTATTTAC24423771AACACTTGCAACTTCATTTTCCTTTTTATTGATCAAGCTATGAAGAGAGAGA
Brassica oleracea HDEM genome, scaffold: C4.
LR031873.1:60440424-60440445
CCTTGAATATACCACCAGAAATGTATTTAC60440424AACACTTGCAACTTCATTTTCCTTTTTATTGAGCAAGCTCTGAAGAGAGAGA
Brassica napus cultivar Xiang5A chromosome 10.
CP123885.1:14176997-14177018
CTCTCTCTCTAATAGTTAGCTCAATAAAAA14176997GGAAAATGAAGTTGCAAGTGTTGTAAACATATTTCTGGTGGTATATTCAAGG
Brassica napus genome assembly, chromosome: A06.
HG994360.1:12729687-12729708
CTCTCTCTCTAATAGTTAGCTCAATAAAAA12729687GGAAAATGAAGTTGCAAGTGTTGTAAACATATTTCTGGTGGTATATTCAAGG
Brassica napus genome assembly, chromosome: C03.
HG994367.1:50769332-50769353
TCTCTCTCTTCATAGTTAGCTCAATAAAAA50769332GGAAAATGAAGTTGCAAGTGTTGTAAATATATTTCTGGTGGTATATTCAAGG
Brassica rapa genome, scaffold: A06.
LR031569.1:12709322-12709343
CTCTCTCTCTAATAGTTAGCTCAATAAAAA12709322GGAAAATGAAGTTGCAAGTGTTGTAAACATATTTCTGGTGGTATATTCAAGG
Brassica oleracea HDEM genome, scaffold: C3.
LR031872.1:51151074-51151095
TCTCTCTCTTCATAGTTAGCTCAATAAAAA51151074GGAAAATGAAGTTGCAAGTGTTGTAAATATATTTCTGGTGGTATATTCAAGG
Brassica rapa genome assembly, chromosome: A06.
LS974622.2:13558283-13558304
CTCTCTCTCTAATAGTTAGCTCAATAAAAA13558283GGAAAATGAAGTTGCAAGTGTTGTAAACATATTTCTGGTGGTATATTCAAGG

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/AACACTTGCAACTTCATTTTCC
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : AACACTTGCAACTTCATTTTCC | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.401 | 0.392 | search_plus_done; http://172.18.8.135:50400/match?q=AACACTTGCAACTTCATTTTCC&k=0&no_gap=0&offset=0&limit=50
0.548 | 0.148 | search_minus_done; http://172.18.8.135:50400/match?q=GGAAAATGAAGTTGCAAGTGTT&k=0&no_gap=0&offset=0&limit=45
0.552 | 0.004 | cgi_end;

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