GGGenome | Results

2025-04-12 17:18:13, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and in~~dels~~ are marked in red.

UCRCS06_0002F19_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0002F19, mRNA sequence.
CN189753.1:104-123

CTCCACCATGACGACGAGTTAGGCATAAGC104AACAGCACAAACACGCAAAGCGAAGAAGAAGAAGGGAAAAAAAGGCTTTG

UCRPT01_0005K15_r Poncirus trifoliata CTV-challenged cDNA library - AGI2 Citrus trifoliata cDNA clone PT_6Ea0005K15, mRNA sequence.
CV704617.1:99-118

CTCCACCATGACGACGAGTTAGGTATAAGC99AACAGCACAAACACGCAAAGCGAAGAAGAAGAAGGGAAAAAAAGGCTTTG

UCRPT01_0005O03_r Poncirus trifoliata CTV-challenged cDNA library - AGI2 Citrus trifoliata cDNA clone PT_6Ea0005O03, mRNA sequence.
CV704760.1:135-154

CTCCACCATGACGACGAGTTAGGTATAAGC135AACAGCACAAACACGCAAAGCGAAGAAGAAGAAGGGAAAAAACGGCTTTG

UCRPT01_0011I02_r Poncirus trifoliata CTV-challenged cDNA library - AGI2 Citrus trifoliata cDNA clone PT_6Ea0011I02, mRNA sequence.
CV708555.1:81-100

CTCCACCATGACGACGAGTTAGGTATAAGC81AACAGCACAAACACGCAAAGCGAAGAAGAAGAAGGAAAAAAACGGCTTTG

IC0AAA10BE01RM1 CitNFL Citrus clementina cDNA 5', mRNA sequence.
DY262932.1:100-119

CTCCACCATGACGACGAGTTAGGCATAAGC100AACAGCACAAACACGCAAAGCGAAGAAGAAGAAGGAAAAAAAAGGCTTTG

IC0AAA11AF07RM1 CitNFL Citrus clementina cDNA 5', mRNA sequence.
DY263223.1:144-163

CTCCACCATGACGACGAGTTAGGCATAAGC144AACAGCACAAACACGCAAAGCGAAGAAGAAGAAGGGAAAAAAAGGCTTTG

IC0AAA13CF02RM1 CitNFL Citrus clementina cDNA 5', mRNA sequence.
DY264115.1:95-114

CTACACCATGACGACGAGTTAGGTATAAGC95AACAGCACAAACACGCAAAGCGAAGAAGAAGGGAAAAAAAGGCTTTGGTA

IC0AAA16BH04RM1 CitNFL Citrus clementina cDNA 5', mRNA sequence.
DY265135.1:172-191

CTCCACCATGACGACGAGTTAGGTATAAGC172AACAGCACAAACACGCAAAGCGAAGAAGAAGGGAAAAAAAGGCTTTGGTA

IC0AAA29BB06RM1 CitNFL Citrus clementina cDNA 5', mRNA sequence.
DY270267.1:140-159

CTACACCATGACGACGAGTTAGGTATAAGC140AACAGCACAAACACGCAAAGCGAAGAAGAAGGGAAAAAAAGGCTTTGGTA

IC0AAA43BF04RM1 CitNFL Citrus clementina cDNA 5', mRNA sequence.
DY277265.1:34-53

CTCCATCATGACGACGAGTTAGGCATAAGC34AACAGCACAAACACGCAAAGCGAAGAAGAAGAAGGGAAAAAAAGGCTTTG

IC0AAA51DB03RM1 CitNFL Citrus clementina cDNA 5', mRNA sequence.
DY280650.1:102-121

CTACACCATGACGACGAGTTAGGTATAAGC102AACAGCACAAACACGCAAAGCGAAGAAGAAGGGAAAAAAAGGCTTTGGTA

IC0AAA52BB03RM1 CitNFL Citrus clementina cDNA 5', mRNA sequence.
DY280830.1:98-117

CTACACCATGACGACGAGTTAGGTATAAGC98AACAGCACAAACACGCAAAGCGAAGAAGAAGGGAAAAAAAGGCTTTGGTA

IC0AAA55AC07RM1 CitNFL Citrus clementina cDNA 5', mRNA sequence.
DY281841.1:153-172

CTCCACCATGACGACGAGTTAGGCATAAGC153AACAGCACAAACACGCAAAGCGAAGAAGAAGAAGGGAAAAAAAGGCTTTG

IC0AAA66CH02RM1 CitNFL Citrus clementina cDNA 5', mRNA sequence.
DY287031.1:149-168

CTACACCATGACGACGAGTTAGGTATAAGC149AACAGCACAAACACGCAAAGCGAAGAAGAAGGGAAAAAAAGGCTTTGGTA

IC0AAA73CC06RM1 CitNFL Citrus clementina cDNA 5', mRNA sequence.
DY289781.1:133-152

CTACACCATGACGACGAGTTAGGTATAAGC133AACAGCACAAACACGCAAAGCGAAGAAGAAGGGAAAAAAAGGCTTTGGTA

IC0AAA78BD11RM1 CitNFL Citrus clementina cDNA 5', mRNA sequence.
DY291511.1:153-172

CTCCACCATGACGACGAGTTAGGCATAAGC153AACAGCACAAACACGCAAAGCGAAGAAGAAGAAGGGAAAAAAAGGCTTTG

IC0AAA88AE03RM1 CitNFL Citrus clementina cDNA 5', mRNA sequence.
DY295379.1:82-101

CTACACCATGACGACGAGTTAGGTATAAGC82AACAGCACAAACACGCAAAGCGAAGAAGAAGGGAAAAAAAGGCTTTGGTA

IC0AAA93BC01RM1 CitNFL Citrus clementina cDNA 5', mRNA sequence.
DY297637.1:246-265

CTACACCATGACGACGAGTTAGGTATAAGC246AACAGCACAAACACGCAAAGCGAAGAAGAAGGGAAAAAAAGGCTTTGGTA

KN0AAQ6YM24RM1 CitNFL Citrus clementina cDNA 5', mRNA sequence.
DY303795.1:98-117

CTACACCATGACGACGAGTTAGGTATAAGC98AACAGCACAAACACGCAAAGCGAAGAAGAAGGGAAAAAAAGGCTTTGGTA

CS00-C1-102-016-C10-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 2 of 2) Citrus sinensis cDNA, mRNA sequence.
EY666561.1:81-100

CTCCACCATGACGACGAGTTAGGCATAAGC81AACAGCACAAACACGCAAAGCGAAGAAGAAGAAGGGAAAAAAAGGCTTTG

CS00-C1-102-099-E12-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 2 of 2) Citrus sinensis cDNA, mRNA sequence.
EY668037.1:107-126

CTCCACCATGACGAGGAGTTATGCATAAGC107AACAGCACAAACACGCAAAGCGAAGAAGAAGAAGGGAAAAAAAGGCTTTG

CS00-C1-102-076-A09-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 2 of 2) Citrus sinensis cDNA, mRNA sequence.
EY669522.1:106-125

CTCCACCATGACGACGAGTTAGGCATAAGC106AACAGCACAAACACGCAAAGCGAAGAAGAAGAAGGGAAAAAAAGGCTTTG

CS00-C1-102-101-C06-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 2 of 2) Citrus sinensis cDNA, mRNA sequence.
EY672535.1:107-126

CTCCACCATGACGACGAGTTAGGCATAAGC107AACAGCACAAACACGCAAAGCGAAGAAGAAGAAGGGAAAAAAAGGCTTTG

CR05-C3-700-144-G11-CT.F Mandarin fruit, development stadium (1 of 3) Citrus reticulata cDNA, mRNA sequence.
EY792629.1:155-174

CTCCACCATGACGACGAGTTAGGCATAAGC155AACAGCACAAACACGCAAAGCGAAGAAGAAGAAGGGAAAAAAAGGCTTTG

CM30-C1-401-089-E08-CT.F Sweet lime leaf, infected with CiLV Citrus limettioides cDNA, mRNA sequence.
EY866228.1:91-110

CTCCACCATGACGACGAGTTAGGTATAAGC91AACAGCACAAACACGCAAAGCGAAGAAGAAGAAGGGAAAAAAAAAGGCTT

IC0AAA55AC07RM1 IVIA1 Citrus clementina cDNA clone IC0AAA55AC07, mRNA sequence.
FC878215.1:153-172

CTCCACCATGACGACGAGTTAGGCATAAGC153AACAGCACAAACACGCAAAGCGAAGAAGAAGAAGGGAAAAAAAGGCTTTG

IC0AAA51DB03RM1 IVIA1 Citrus clementina cDNA clone IC0AAA51DB03, mRNA sequence.
FC879598.1:102-121

CTACACCATGACGACGAGTTAGGTATAAGC102AACAGCACAAACACGCAAAGCGAAGAAGAAGGGAAAAAAAGGCTTTGGTA

IC0AAA78BD11RM1 IVIA1 Citrus clementina cDNA clone IC0AAA78BD11, mRNA sequence.
FC881724.1:153-172

CTCCACCATGACGACGAGTTAGGCATAAGC153AACAGCACAAACACGCAAAGCGAAGAAGAAGAAGGGAAAAAAAGGCTTTG

IC0AAA93BC01RM1 IVIA1 Citrus clementina cDNA clone IC0AAA93BC01, mRNA sequence.
FC887243.1:246-265

CTACACCATGACGACGAGTTAGGTATAAGC246AACAGCACAAACACGCAAAGCGAAGAAGAAGGGAAAAAAAGGCTTTGGTA

IC0AAA73CC06RM1 IVIA1 Citrus clementina cDNA clone IC0AAA73CC06, mRNA sequence.
FC887611.1:133-152

CTACACCATGACGACGAGTTAGGTATAAGC133AACAGCACAAACACGCAAAGCGAAGAAGAAGGGAAAAAAAGGCTTTGGTA

IC0AAA52BB03RM1 IVIA1 Citrus clementina cDNA clone IC0AAA52BB03, mRNA sequence.
FC891797.1:98-117

CTACACCATGACGACGAGTTAGGTATAAGC98AACAGCACAAACACGCAAAGCGAAGAAGAAGGGAAAAAAAGGCTTTGGTA

IC0AAA11AF07RM1 IVIA1 Citrus clementina cDNA clone IC0AAA11AF07, mRNA sequence.
FC893464.1:144-163

CTCCACCATGACGACGAGTTAGGCATAAGC144AACAGCACAAACACGCAAAGCGAAGAAGAAGAAGGGAAAAAAAGGCTTTG

IC0AAA43BF04RM1 IVIA1 Citrus clementina cDNA clone IC0AAA43BF04, mRNA sequence.
FC895290.1:30-49

TCCATCATGACGACGAGTTAGGCATAAGC30AACAGCACAAACACGCAAAGCGAAGAAGAAGAAGGGAAAAAAAGGCTTTG

IC0AAA66CH02RM1 IVIA1 Citrus clementina cDNA clone IC0AAA66CH02, mRNA sequence.
FC899335.1:149-168

CTACACCATGACGACGAGTTAGGTATAAGC149AACAGCACAAACACGCAAAGCGAAGAAGAAGGGAAAAAAAGGCTTTGGTA

IC0AAA88AE03RM1 IVIA1 Citrus clementina cDNA clone IC0AAA88AE03, mRNA sequence.
FC899359.1:82-101

CTACACCATGACGACGAGTTAGGTATAAGC82AACAGCACAAACACGCAAAGCGAAGAAGAAGGGAAAAAAAGGCTTTGGTA

IC0AAA16BH04RM1 IVIA1 Citrus clementina cDNA clone IC0AAA16BH04, mRNA sequence.
FC899961.1:172-191

CTCCACCATGACGACGAGTTAGGTATAAGC172AACAGCACAAACACGCAAAGCGAAGAAGAAGGGAAAAAAAGGCTTTGGTA

KN0AAQ6YM24RM1 IVIA1 Citrus clementina cDNA clone KN0AAQ6YM24, mRNA sequence.
FC901220.1:98-117

CTACACCATGACGACGAGTTAGGTATAAGC98AACAGCACAAACACGCAAAGCGAAGAAGAAGGGAAAAAAAGGCTTTGGTA

IC0AAA29BB06RM1 IVIA1 Citrus clementina cDNA clone IC0AAA29BB06, mRNA sequence.
FC911580.1:140-159

CTACACCATGACGACGAGTTAGGTATAAGC140AACAGCACAAACACGCAAAGCGAAGAAGAAGGGAAAAAAAGGCTTTGGTA

IC0AAA13CF02RM1 IVIA1 Citrus clementina cDNA clone IC0AAA13CF02, mRNA sequence.
FC913302.1:95-114

CTACACCATGACGACGAGTTAGGTATAAGC95AACAGCACAAACACGCAAAGCGAAGAAGAAGGGAAAAAAAGGCTTTGGTA

IC0AAA10BE01RM1 IVIA1 Citrus clementina cDNA clone IC0AAA10BE01, mRNA sequence.
FC915134.1:100-119

CTCCACCATGACGACGAGTTAGGCATAAGC100AACAGCACAAACACGCAAAGCGAAGAAGAAGAAGGAAAAAAAAGGCTTTG

C32107F02EF RVDevelopN Citrus clementina cDNA clone C32107F02, mRNA sequence.
FC921636.1:112-131

CTACACCATGACGACGAGTTAGGTATAAGC112AACAGCACAAACACGCAAAGCGAAGAAGAAGGGAAAAAAAGGCTTTGGTA

Fagus sylvatica genome assembly, chromosome: 2.
OU015762.1:6713542-6713561

GGGTTTTGGCAGACCTGTTGGGAATGCTCT6713542AACAGCACAAACACGCAAAGAGAACTTAAAAAAGTGGAATTTTAAGCCAA

Sympetrum striolatum genome assembly, chromosome: 9.
OX388349.1:69232873-69232892

GCAAATCCTGCGCACGGCCCTGGTCTACAG69232873AACAGCACAAACACGCAAAGATGTGCCACAACAAGCGACTATTCATACAA

Fagus sylvatica genome assembly, chromosome: 2.
OU015762.1:6750313-6750332

TTGGCTTAAAATTCCACTTTTTTAAGTTCT6750313CTTTGCGTGTTTGTGCTGTTAGAGCATTCCCAACAGGTCTGCCAAAACCC

Citrus sinensis genome assembly, chromosome: 9.
OY754326.1:4164386-4164405

CAAAGCCTTTTTTTCCCTTCTTCTTCTTCG4164386CTTTGCGTGTTTGTGCTGTTGCTTATGCCTAACTCGTCGTCATGGTGGAG

Xanthorhoe spadicearia genome assembly, chromosome: 11.
OX352205.1:6788885-6788904

ATCTGTAAATGTGAAACTTTTTGTTATCAC6788885CTTTGCGTGTTTGTGCTGTTGTTTCTCTAAATTGTACAGAAATACGAGTA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

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Debug Info:

0.009 | 0.009 | search_start;
2.562 | 2.553 | search_plus_done; http://172.18.8.135:50400/match?q=AACAGCACAAACACGCAAAG&k=0&no_gap=0&offset=0&limit=50
2.620 | 0.058 | search_minus_done; http://172.18.8.135:50400/match?q=CTTTGCGTGTTTGTGCTGTT&k=0&no_gap=0&offset=0&limit=7
2.622 | 0.002 | cgi_end;

GGGenome by @meso_cacase at DBCLS
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