GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-04 23:15:05, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Dianthus caryophyllus mRNA, clone: CES07N09, 5' end sequence.
FY385060.1:169-188
CTCAACCGGTCACCATCCCCTCCTTCCCTG169AACAGTCCGCCCTACTCTCAGGCTGCCCGGTCAACCTGCCCGCCGCACTC
Dianthus caryophyllus mRNA, clone: CES09J16, 5' end sequence.
FY385732.1:171-190
CTCAACCGGTCACCATCCCCTCCTTCCCTG171AACAGTCCGCCCTACTCTCAGGCTGCCCGGTCAACCTGCCCGCCGCACTC
Dianthus caryophyllus mRNA, clone: CFES21N24, 5' end sequence.
FY402020.1:275-294
CTCAACCGGTCACCATCCCCTCCTTCCCTG275AACAGTCCGCCCTACTCTCAGGCTGCCCGGTCAACCTGCCCGCCGCACTC
TSA: Dianthus caryophyllus mRNA, contig: CAK09.613.C1.
FX297774.1:274-293
CTCAACCGGTCACCATCCCCTCCTTCCCTG274AACAGTCCGCCCTACTCTCAGGCTGCCCGGTCAACCTGCCCGCCGCACTC
Colias eurytheme genome assembly, chromosome: 21.
OU015413.1:486207-486226
CGGAAATTTATTTTTCATACCTGTAAGTGA486207TGAGAGTAGGGCGGACTGTTTTTCGGGACAGCTAGTGGACTATAATAATT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/AACAGTCCGCCCTACTCTCA
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : AACAGTCCGCCCTACTCTCA | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.330 | 0.321 | search_plus_done; http://172.18.8.135:50400/match?q=AACAGTCCGCCCTACTCTCA&k=0&no_gap=0&offset=0&limit=50
0.360 | 0.030 | search_minus_done; http://172.18.8.135:50400/match?q=TGAGAGTAGGGCGGACTGTT&k=0&no_gap=0&offset=0&limit=46
0.361 | 0.001 | cgi_end;

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