GGGenome Help | English

データベース：
 

ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-03 15:01:13, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Apodemus sylvaticus genome assembly, chromosome: 18.
OX359315.1:8949382-8949401
GACATGGACGCTACTTTGAAGCATAATTAT8949382AACATGATTCCGGTTTGGAAACGGCTGGTGCTCACCTTAAGGTCAGGAAC
Trifolium pratense DNA, clone:RCG01046.
DE246695.1:45-64
GTTGAATCGATCCGGAAGGTTTGTCGTGGG45AACATGATTCCGGTTTGGAATTTTCTCGTCACGCGTGCTAAGTCTGAGAA
Trifolium repens isolate ACLI19 chromosome 07_0cc.
CP125848.1:2697841-2697860
GTTGATTCGATCCGGAAGGTTTGTCGTGGG2697841AACATGATTCCGGTTTGGAATTTTCTCGTCACGCGTGCTAAGTCTGAGAA
Trifolium repens isolate ACLI19 chromosome 07_Pall.
CP125849.1:2808094-2808113
GTTGAATCGATCCGGAAGGTTTGTCGTGGG2808094AACATGATTCCGGTTTGGAATTTTCTCGTCACGCGTGCTAAGTCTGAGAA
Sambucus nigra genome assembly, chromosome: 13.
OX422219.1:151714969-151714988
ACGGATTCCATTCGTCGAATTTGTCGCGGA151714969AACATGATTCCGGTTTGGAATTTCCTTTTAAAGAGGGTGAGATCGGAGAA
Vicia faba genome assembly, chromosome: 1S.
OX451735.1:101458630-101458649
GTTGAGTCGATCCGGAAGGTTTGTCGCGGG101458630AACATGATTCCGGTTTGGAATTTCCTCGTCACGCGCGCGAAGTCGGAGAA
Trifolium dubium genome assembly, chromosome: 4.
OX638065.1:3674828-3674847
GTCGAATCGATCCGGAAGGTATGTCGCGGT3674828AACATGATTCCGGTTTGGAATTTTCTCGTTACGCGTGCTAAGTCGGAGAA
Trifolium dubium genome assembly, chromosome: 11.
OX638072.1:2630653-2630672
GTTGAATCGATCCGGAAGGTTTGTCGTGGT2630653AACATGATTCCGGTTTGGAATTTTCTCGTTACGCGTGCTAAGTCGGAGAA
Trifolium fragiferum genome assembly, chromosome: 5.
OX940793.1:3548573-3548592
GTTGAATCGATCCGGAAGGTTTGTCGAGGG3548573AACATGATTCCGGTTTGGAATTTTCTCGTCACGCGTGCTAAGTCTGAGAA
Inga oerstediana genome assembly, chromosome: 3.
OY723401.1:69207207-69207226
GTTGAGTCGTTTCGGAAGATTTGCCGTGGG69207207AACATGATTCCGGTTTGGAATTTCTTGATAACACGGGTGAAGTCGGAGAA
Inga leiocalycina genome assembly, chromosome: 3.
OY725322.1:68705737-68705756
GTTGAGTCGTTTCGGAAGATTTGCCGTGGG68705737AACATGATTCCGGTTTGGAATTTCTTGATAACACGGGTGAAGTCGGAGAA
Inga laurina genome assembly, chromosome: 3.
OY979703.1:68583269-68583288
GTTGAGTCGTTTCGGAAGATTTGCCGTGGG68583269AACATGATTCCGGTTTGGAATTTCTTGATAACACGGGTGAAGTCGGAGAA
Lathyrus sativus genome assembly, chromosome: 3.
OZ012737.1:20571324-20571343
GTTGAATCGATCCGGAAGGTTTGTCGCGGG20571324AACATGATTCCGGTTTGGAATTTTCTCGTCACGCGCGCTAAGTCTGAGAA
Leptidea sinapis genome assembly, chromosome: 4.
FR990157.1:13924652-13924671
AGCATATTGGTCTAGTGGTAATTATCCGAC13924652AACATGATTCCGGTTTGGAAACATTTAAAATCGCACTGATGTTTTTAGAT
Trifolium subterraneum genome assembly, chromosome: 4.
OX637464.1:56344224-56344243
TTCTCAGACTTAGCACGCGTGACGAGAAAA56344224TTCCAAACCGGAATCATGTTCCCTCGACAAACCTTCCGGATCGATTCAAC

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/AACATGATTCCGGTTTGGAA
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : AACATGATTCCGGTTTGGAA | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.184 | 0.175 | search_plus_done; http://172.18.8.135:50400/match?q=AACATGATTCCGGTTTGGAA&k=0&no_gap=0&offset=0&limit=50
0.269 | 0.086 | search_minus_done; http://172.18.8.135:50400/match?q=TTCCAAACCGGAATCATGTT&k=0&no_gap=0&offset=0&limit=36
0.271 | 0.002 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).