GGGenome Help | English

データベース：
 

ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-03 12:14:26, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

TSA: Raphanus sativus var. sativus RNA, contig: WG3_22110.
FX681487.1:440-459
GAGGAGAAGCAAACATTGTAAAGAGATAGG440AACCAGTCGTTGTAAGCAGGTGTTGATGAGAATGTTGTGTAGGCTTCATA
odi59b01.g1 B.oleracea002 Brassica oleracea genomic, genomic survey sequence.
BH925782.1:361-380
GACGAGAAGAAAACATTGTAAAGAGATAGG361AACCAGTCGTTGTAAGCAGGTGTAGCTGAGAATGTTGTATATGCTTCATA
SIR-49O12JR Sisymbrium irio BAC library SIR Sisymbrium irio genomic clone SIR-49O12, genomic survey sequence.
FI812297.1:348-367
GACGAGAAGAAAACATTGTAAAGAGATAGA348AACCAGTCGTTGTAAGCAGGTGTCGATGAGAATGTCGTGTATGCTTCATA
Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB026C23, complete sequence.
AC189291.2:21071-21090
GAAGAGAAGCAAACATTGTAAAGAGATAGG21071AACCAGTCGTTGTAAGCAGGTGTTGCTGAGAATGTTGTGTATGCTTCATA
Brassica napus cultivar Xiang5A chromosome 8.
CP123883.1:6874945-6874964
GAAGAGAAGCAAACATTGTAAAGAGATAGG6874945AACCAGTCGTTGTAAGCAGGTGTAGCTGAGAATGTTGTGTATGCTTCATA
Raphanus sativus genome assembly, chromosome: 3.
LR778312.1:4528020-4528039
GAGGAGAAGCAAACGTTGTAAAGAGATAGG4528020AACCAGTCGTTGTAAGCAGGTGTTGATGAGAATGTTGTGTAGGCTTCATA
Thlaspi arvense genome assembly, chromosome: 5.
OU466861.1:49709383-49709402
GACGAGAAGAAGACATTGTAAAGAGATAGA49709383AACCAGTCGTTGTAAGCAGGTGTCGCTGAGAATGTTGTGTATGCTTCATA
Chenopodium album genome assembly, chromosome: 11.
OX419218.1:10887140-10887159
GATGTAAAGATGACATTGTAGAGGGTCAAA10887140AACCAGTCGTTGTAAGCAGGTTCCCCAGAGAATGATGAGTATGCATCGTA
Euphrasia confusa genome assembly, chromosome: 5.
OX940953.1:22442868-22442887
GATGTGAAGAATACGTTATAAAGGGACAAA22442868AACCAGTCGTTGTAAGCAGGTTGTCCTGAAAACGACGCGTGAGCCTCGTA
Raphanus sativus genome assembly, chromosome: 9.
OY743206.1:2465920-2465939
GAGGAGAAGCAAACGTTGTAAAGAGATAGG2465920AACCAGTCGTTGTAAGCAGGTGTTGATGAGAATGTTGTGTAGGCTTCATA
Raphanus sativus genome assembly, chromosome: 7.
OY743213.1:10806383-10806402
GAGGAGAAGAAAACATTGTAAAGAGATAAG10806383AACCAGTCGTTGTAAGCAGGTGTAGCTGAGAATGTTGTGTATGCTTCATA
TSA: Brassica rapa subsp. pekinensis RNA, contig: CF3_26794.
FX701211.1:615-634
TATGAAGCATACACAACATTCTCAGCAACA615CCTGCTTACAACGACTGGTTCCTATCTCTTTACAATGTTTGCTTCTCTTC
TSA: Brassica rapa x Raphanus sativus RNA, contig: BB3_59323.
FX775383.1:242-261
TATGAAGCCTACACAACATTCTCATCAACA242CCTGCTTACAACGACTGGTTCCTATCTCTTTACAACGTTTGCTTCTCCTC
BOGCN20TR BOGC Brassica oleracea genomic clone BOGCN20, genomic survey sequence.
BH595205.1:584-603
TATGAAGCATATACAACATTCTCAGCTACA584CCTGCTTACAACGACTGGTTCCTATCTCTTTACAATGTTTTCTTCTCGTC
Brassica rapa subsp. pekinensis, pooled multiple clones, WORKING DRAFT SEQUENCE, 882 unordered pieces.
FJ789639.1:1910436-1910455
TATGAAGCATACACAACATTCTCAGCAACA1910436CCTGCTTACAACGACTGGTTCCTATCTCTTTACAATGTTTGCTTCTCTTC
Brassica rapa subsp. pekinensis, pooled multiple clones, WORKING DRAFT SEQUENCE, 24 unordered pieces.
FJ789655.1:218976-218995
TATGAAGCATACACAACATTCTCAGCAACA218976CCTGCTTACAACGACTGGTTCCTATCTCTTTACAATGTTTGCTTCTCTTC
Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB034A02, complete sequence.
AC189308.2:34514-34533
TATGAAGCATACACAACATTCTCAGCAACA34514CCTGCTTACAACGACTGGTTCCTATCTCTTTACAATGTTTGCTTCTCTTC
Brassica napus cultivar Xiang5A chromosome 12.
CP123887.1:45156602-45156621
TATGAAGCGTACACAACATTCTCAGCTACA45156602CCTGCTTACAACGACTGGTTCCTATCTCTTTACAATGTTTTCTTCTCTTC
Brassica napus genome assembly, chromosome: A07.
HG994361.1:22666153-22666172
TATGAAGCATACACAACATTCTCAGCTACA22666153CCTGCTTACAACGACTGGTTCCTATCTCTTTACAATGTTTGCTTCTCTTC
Brassica napus genome assembly, chromosome: C06.
HG994370.1:39238607-39238626
TATGAAGCGTACACAACATTCTCAGCTACA39238607CCTGCTTACAACGACTGGTTCCTATCTCTTTACAATGTTTTCTTCTCTTC
Brassica rapa genome, scaffold: A07.
LR031574.1:21566078-21566097
TATGAAGCATACACAACATTCTCAGCAACA21566078CCTGCTTACAACGACTGGTTCCTATCTCTTTACAATGTTTGCTTCTCGTC
Brassica oleracea HDEM genome, scaffold: C6.
LR031880.1:35835211-35835230
TATGAAGCGTACACAACATTCTCAGCTACA35835211CCTGCTTACAACGACTGGTTCCTATCTCTTTACAATGTTTTCTTCTCTTC
Raphanus sativus genome assembly, chromosome: 8.
LR778317.1:22172999-22173018
TATGAAGCATACACAACATTCTCAGCTACA22172999CCTGCTTACAACGACTGGTTCTTATCTCTTTACAATGTTTTCTTCTCCTC
Brassica rapa genome assembly, chromosome: A07.
LS974623.2:21857346-21857365
TATGAAGCATACACAACATTCTCAGCAACA21857346CCTGCTTACAACGACTGGTTCCTATCTCTTTACAATGTTTGCTTCTCGTC
Draba incana genome assembly, chromosome: 14.
OY755215.1:7343663-7343682
TACGAAGCATACACAACATTCTCATCGACG7343663CCTGCTTACAACGACTGGTTTCTATCTCTTTACAATGTATTTTTCTCGTC

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/AACCAGTCGTTGTAAGCAGG
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : AACCAGTCGTTGTAAGCAGG | format : html | download : | debug : 

0.008 | 0.008 | search_start;
0.179 | 0.171 | search_plus_done; http://172.18.8.135:50400/match?q=AACCAGTCGTTGTAAGCAGG&k=0&no_gap=0&offset=0&limit=50
0.271 | 0.091 | search_minus_done; http://172.18.8.135:50400/match?q=CCTGCTTACAACGACTGGTT&k=0&no_gap=0&offset=0&limit=39
0.280 | 0.009 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).