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Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-09 15:23:05, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

CGN-38310 Seed of Late Development Stage Coffea canephora cDNA clone cccs46w3h11 5', mRNA sequence.
DV693984.1:175-200
CCATCACCACCAACTTGCTTCAGATCAAGA175AACCGGCCTTCTTGTATGATTCTCTAACCCTGCATTTCCTTCCTCGAATCAATGGT
CGN-39119 Seed of Late Development Stage Coffea canephora cDNA clone cccs46w4h4 5', mRNA sequence.
DV694571.1:156-181
CCATCACCACCAACTTGCTTCAGATCAAGA156AACCGGCCTTCTTGTATGATTCTCTAACCCTGCATTTCCTTCCTCGAATCAATGGT
CGN-40817 Seed of Late Development Stage Coffea canephora cDNA clone cccs46w7c17 5', mRNA sequence.
DV695836.1:175-200
CCATCACCACCAACTTGCTTCAGATCAAGA175AACCGGCCTTCTTGTATGATTCTCTAACCCTGCATTTCCTTCCTCGAATCAATGGT
CGN-40989 Seed of Late Development Stage Coffea canephora cDNA clone cccs46w10p15 5', mRNA sequence.
DV695967.1:175-200
CCATCACCACCAACTTGCTTCAGATCAAGA175AACCGGCCTTCTTGTATGATTCTCTAACCCTGCATTTCCTTCCTCGAATCAATGGT
CGN-41029 Seed of Late Development Stage Coffea canephora cDNA clone cccs46w12a4 5', mRNA sequence.
DV695998.1:144-169
CCATCACCACCAACTTGCTTCAGATCAAGA144AACCGGCCTTCTTGTATGATTCTCTAACCCTGCATTTCCTTCCTCGAATCAATGGT
CGN-41096 Seed of Late Development Stage Coffea canephora cDNA clone cccs46w4i4 5', mRNA sequence.
DV696047.1:156-181
CCATCACCACCAACTTGCTTCAGATCAAGA156AACCGGCCTTCTTGTATGATTCTCTAACCCTGCATTTCCTTCCTCGAATCAATGGT
CGN-44052 Seed of Late Development Stage Coffea canephora cDNA clone cccs46w22k8 5', mRNA sequence.
DV698412.1:175-200
CCATCACCACCAACTTGCTTCAGATCAAGA175AACCGGCCTTCTTGTATGATTCTCTAACCCTGCATTTCCTTCCTCGAATCAATGGT
CGN-45018 Seed of Late Development Stage Coffea canephora cDNA clone cccs46w6m18 5', mRNA sequence.
DV699227.1:175-200
CCATCACCACCAACTTGCTTCAGATCAAGA175AACCGGCCTTCTTGTATGATTCTCTAACCCTGCATTTCCTTCCTCGAATCAATGGT
CGN-47410 Seed of Late Development Stage Coffea canephora cDNA clone cccs46w21e5 5', mRNA sequence.
DV701254.1:175-200
CCATCACCACCAACTTGCTTCAGATCAAGA175AACCGGCCTTCTTGTATGATTCTCTAACCCTGCATTTCCTTCCTCGAATCAATGGT
CGN-50166 Seed of Late Development Stage Coffea canephora cDNA clone cccs46w29c5 5', mRNA sequence.
DV703575.1:175-200
CCATCACCACCAACTTGCTTCAGATCAAGA175AACCGGCCTTCTTGTATGATTCTCTAACCCTGCATTTCCTTCCTCGAATCAATGGT
CGN-50692 Seed of Late Development Stage Coffea canephora cDNA clone cccs46w30n21 5', mRNA sequence.
DV704009.1:175-200
CCATCACCACCAACTTGCTTCAGATCAAGA175AACCGGCCTTCTTGTATGATTCTCTAACCCTGCATTTCCTTCCTCGAATCAATGGT
CC-F01_013_F15 Cherry of different development stage Coffea canephora cDNA clone CC-F01_013_F15, mRNA sequence.
EE198645.1:159-184
CCATCACCACCAACTTGCTTCAGATCAAGA159AACCGGCCTTCTTGTATGATTCTCTAACCCTGCATTTCCTTCCTCGAATCAATGGT
CC-F01_019_B09 Cherry of different development stage Coffea canephora cDNA clone CC-F01_019_B09, mRNA sequence.
EE200253.1:172-197
CCATCACCACCAACTTGCTTCAGATCAAGA172AACCGGCCTTCTTGTATGATTCTCTAACCCTGCATTTCCTTCCTCGAATCAATGGT
TransId-235713 CAET42MIX Coffea arabica cDNA clone CAET42MIX-CFEXA11TV similar to Hypothetical protein At4g24110/T19F6_100 - Arabidopsis thaliana (Mouse-ear cress), mRNA sequence.
GT007641.1:185-210
CCATCACCACCAACTTGCTTCAGATCAAGA185AACCGGCCTTCTTGTATGATTCTCTAACCCTGCATTTCCTTCCTCGAATCAATGGT
TransId-240191 CAET42MIX Coffea arabica cDNA clone CAET42MIX-CFEYQ88TV similar to Hypothetical protein At4g24110/T19F6_100 - Arabidopsis thaliana (Mouse-ear cress), mRNA sequence.
GT009332.1:314-339
CCATCACCACCAACTTGCTTCAGATCAAGA314AACCGGCCTTCTTGTATGATTCTCTAACCCTGCATTTCCTTCCTCGAATCAATGGT
CA00-XX-NS1-001-B11-EF.F Coffea arabica NS1 Coffea arabica cDNA clone CA00-XX-NS1-001-B11-EF, mRNA sequence.
GT687158.1:165-190
CCATCACCACCAACTTGCTTCAGATCAAGA165AACCGGCCTTCTTGTATGATTCTCTAACCCTGCATTTCCTTCCTCGAATCAATGGT
CA00-XX-FB4-018-D11-MC.F Coffea arabica FB4 Coffea arabica cDNA clone CA00-XX-FB4-018-D11-MC, mRNA sequence.
GT713498.1:164-189
CCATCACCACCAACTTGCTTCAGATCAAGA164AACCGGCCTTCTTGTATGATTCTCTAACCCTGCATTTCCTTCCTCGAATCAATGGT
CA00-XX-FR1-001-B02-MC.F Coffea arabica FR1 Coffea arabica cDNA clone CA00-XX-FR1-001-B02-MC, mRNA sequence.
GT714884.1:105-130
CCATCACCACCAACTTGCTTCAGATCAAGA105AACCGGCCTTCTTGTATGATTCTCTAACCCTGCATTTCCTTCCTCGAATCAATGGT
CA00-XX-SI3-088-H05-EM.F Coffea arabica SI3 Coffea arabica cDNA clone CA00-XX-SI3-088-H05-EM, mRNA sequence.
GT720727.1:164-189
CCATCACCACCAACTTGCTTCAGATCAAGA164AACCGGCCTTCTTGTATGATTCTCTAACCCTGCATTTCCTTCCTCGAATCAATGGT
CA00-XX-SI3-003-G01-EM.F Coffea arabica SI3 Coffea arabica cDNA clone CA00-XX-SI3-003-G01-EM, mRNA sequence.
GT720728.1:105-130
CCATCACCACCAACTTGCTTCAGATCAAGA105AACCGGCCTTCTTGTATGATTCTCTAACCCTGCATTTCCTTCCTCGAATCAATGGT
CA00-XX-CS1-060-A03-AC.F Coffea arabica CS1 Coffea arabica cDNA clone CA00-XX-CS1-060-A03-AC, mRNA sequence.
GT725068.1:159-184
CCATCACCACCAACTTGCTTCAGATCAAGA159AACCGGCCTTCTTGTATGATTCTCTAACCCTGCATTTCCTTCCTCGAATCAATGGT
CA00-XX-CB1-040-G11-JM.F Coffea arabica CB1 Coffea arabica cDNA clone CA00-XX-CB1-040-G11-JM, mRNA sequence.
GT734229.1:169-194
CCATCACCACCAACTTGCTTCAGATCAAGA169AACCGGCCTTCTTGTATGATTCTCTAACCCTGCATTTCCTTCCTCGAATCGATGGT
CA00-XX-FB2-026-D06-JM.F Coffea arabica FB2 Coffea arabica cDNA clone CA00-XX-FB2-026-D06-JM, mRNA sequence.
GW464931.1:168-193
CCATCACCACCAACTTGCTTCAGATCAAGA168AACCGGCCTTCTTGTATGATTCTCTAACCCTGCATTTCCTTCCTCGAATCAATGGT
CA00-XX-FB2-049-G04-EP.F Coffea arabica FB2 Coffea arabica cDNA clone CA00-XX-FB2-049-G04-EP, mRNA sequence.
GW485308.1:168-193
CCATCACCACCAACTTGCTTCAGATCAAGA168AACCGGCCTTCTTGTATGATTCTCTAACCCTGCATTTCCTTCCTCGAATCAATGGT
AFP0AAA37YH18FM1 BAC end, cultivar HD200-94 of Coffea canephora, genomic survey sequence.
FO562244.1:57-82
CCATCACCACCAACTTGCTTCAGATCAAGA57AACCGGCCTTCTTGTATGATTCTCTAACCCTGCATTTCCTTCCTCGAATCAATGGT

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