GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-06 20:50:19, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Orcinus orca genome assembly, chromosome: X.
OW443365.1:121323407-121323426
AAATTGAATAACTTAGTGGTTTATTGAAAC121323407AACCTACCCTACTACCACAGACACACACACACACACGCATGCACACAGAG
Brassica napus cultivar Xiang5A chromosome 2.
CP123877.1:6221562-6221581
CTTTTTACAGCTATTTCTTGCCCGTCAAGT6221562AACCTACCCTACTACCACAGTTTCGAATAAACGACAAAGTATTTTGCATT
Brassica napus genome assembly, chromosome: A01.
HG994355.1:6447434-6447453
CTTTTTACAGCTATTTCTTGCCCGTCAAGT6447434AACCTACCCTACTACCACAGTTTCGAATAAACGACAAAGTATTTTGCATT
Brassica napus genome assembly, chromosome: C01.
HG994365.1:9442516-9442535
CTTTTTACAGCTATTTCTTGCCCGTCAAGT9442516AACCTACCCTACTACCACAGTTTCGAATAAACGACAAAGTATTTTGCATT
Brassica rapa genome, scaffold: A01.
LR031571.1:6269173-6269192
CTTTTTACAGCTATTTCTTGCCCGTCAAGT6269173AACCTACCCTACTACCACAGTTTCGAATAAACGACAAAGTATTTTGCATT
Brassica oleracea HDEM genome, scaffold: C1.
LR031878.1:9286728-9286747
CTTTTTACAGCTATTTCTTGCCCGTCAAGT9286728AACCTACCCTACTACCACAGTTTCGAATAAACGACAAAGTATTTTGCATT
Brassica rapa genome assembly, chromosome: A01.
LS974617.2:6293525-6293544
CTTTTTACAGCTATTTCTTGCCCGTCAAGT6293525AACCTACCCTACTACCACAGTTTCGAATAAACGACAAAGTATTTTGCATT
Nudaria mundana genome assembly, chromosome: 15.
OY748301.1:4755944-4755963
CGATGGAGCACCTTTTTAAAAAAGAAAAAG4755944AACCTACCCTACTACCACAGAATAGGGTATTAGTACTTCATAATGCTTTT
Brassica rapa subsp. pekinensis clone KBrB123I09, complete sequence.
FP090262.1:8684-8703
AATGCAAAATACTTTGTCGTTTATTCGAAA8684CTGTGGTAGTAGGGTAGGTTACTTGACGGGCAAGAAATAGCTGTAAAAAG
Brassica rapa BcRK5 gene for receptor kinase 5, complete cds.
AB041621.1:3342-3361
AATGCAAAATACTTTGTCGTTTATTCGAAA3342CTGTGGTAGTAGGGTAGGTTACTTGACGGGCAAGAAATAGCTGTAAAAAG
Brassica napus cultivar Xiang5A chromosome 13.
CP123888.1:47096802-47096821
AATGCAAAATACTTTGTCGTTTATTCGAAA47096802CTGTGGTAGTAGGGTAGGTTACTTGACGGGCAAGAAATAGCTGTAAAAAG
B.oleraceae gene encoding serine/threonine kinase, ARLK.
Y12530.1:2508-2527
AATGCAAAATACTTTGTCGTTTATTCGAAA2508CTGTGGTAGTAGGGTAGGTTACTTGACGGGCAAGAAATAGCTGTAAAAAG
Brassica oleracea SFR2 gene, partial.
Y18257.1:1388-1407
AATGCAAAATACTTTGTCGTTTATTCGAAA1388CTGTGGTAGTAGGGTAGGTTACTTGACGGGCAAGAAATAGCTGTAAAAAG
Helicoverpa armigera genome assembly, chromosome: 15.
OZ005781.1:7214300-7214319
TTATGGCATCTCCGCTCATCTTCCCTTACT7214300CTGTGGTAGTAGGGTAGGTTATTACACAAAACATACCATAATACTAGTAT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/AACCTACCCTACTACCACAG
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : AACCTACCCTACTACCACAG | format : html | download : | debug : 

0.008 | 0.008 | search_start;
0.127 | 0.118 | search_plus_done; http://172.18.8.135:50400/match?q=AACCTACCCTACTACCACAG&k=0&no_gap=0&offset=0&limit=50
0.149 | 0.023 | search_minus_done; http://172.18.8.135:50400/match?q=CTGTGGTAGTAGGGTAGGTT&k=0&no_gap=0&offset=0&limit=42
0.153 | 0.004 | cgi_end;

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