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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
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2025-04-03 12:10:10, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Solanum melongena mRNA, clone: LS503L01, 3'end, expressed in ovary at 5d post-anthesis.
FS021877.1:75-94
ACTTACAGCACGTAGTACTAGATTTATAGA75AACGAAAACACGATCAACCCATTTTACATATTACAAAAGAGTTTAACTTC
Solanum melongena mRNA, clone: SHT02K01, 3'end, expressed in shoot at 7d after germination.
FS064112.1:40-59
ACTTACAGCACGTAGTACTAGATTTATAGA40AACGAAAACACGATCAACCCATTTTACATATTACAAAAGAGTTTAACTTC
Solanum melongena mRNA, clone: SHT04L02, 3'end, expressed in shoot at 7d after germination.
FS065281.1:69-88
ACTTACAGCACGTAGTACTAGATTTATAGA69AACGAAAACACGATCAACCCATTTTACATATTACAAAAGAGTTTAACTTC
Solanum melongena mRNA, clone: SHT07K03, 3'end, expressed in shoot at 7d after germination.
FS066839.1:79-98
ACTTACAGCACGTAGTACTAGATTTATAGA79AACGAAAACACGATCAACCCATTTTACATATTACAAAAGAGTTTAACTTC
Solanum melongena mRNA, clone: YFR01K02, 3'end, expressed in fruit at 2w after anthesis.
FS094787.1:69-88
ACTTACAGCACGTAGTACTAGATTTATAGA69AACGAAAACACGATCAACCCATTTTACATATTACAAAAGAGTTTAACTTC
Sm50PPL05E02 Library from 50 dpa fruit of eggplant cv. PPL Solanum melongena cDNA, mRNA sequence.
JZ717495.1:15-34
ACTAGATTTATAGA15AACGAAAACACGATCAACCCATTTTACATATTACAAAAGAGTTTAACTTC
TSA: Nicotiana benthamiana isotig06596.Nb_root mRNA sequence.
KA753301.1:795-814
CCAAACTTTCTCCAAGAACATTGGGTGGTC795AACGAAAACACGATCAACCCCACGTTTATAGCAGTGAAAGAAACGAACAA
Lu_HindIII_19783 Linum usitatissimum HindIII library Linum usitatissimum genomic clone FLXa1354I03 5', genomic survey sequence.
HR734226.1:372-391
AAAAACCTTCTCAAGGAACAAAGGATGATC372AACGAAAACACGATCAACCCCCCTCTTGTGACAATGGAAGAAGCGCACAG
Linum usitatissimum chromosome Lu3.
CP027627.1:22494320-22494339
AAAAACCTTCTCAAGGAACAAAGGATGATC22494320AACGAAAACACGATCAACCCCCCTCTTGTGACAATGGAAGAAGCGCACAG
Phasia obesa genome assembly, chromosome: 4.
OX451218.1:9628653-9628672
AGCAATTACTGATCATGACCAGGTTTTAGC9628653AACGAAAACACGATCAACCCTGCCACAATAGCGGAAACTAATAGTGCCTA
Solanum melongena mRNA, clone: LS503L01, 5'end, expressed in ovary at 5d post-anthesis.
FS021876.1:393-412
GAAGTTAAACTCTTTTGTAATATGTAAAAT393GGGTTGATCGTGTTTTCGTTTCTATAAATCTAGT
Solanum melongena mRNA, clone: SHT04L02, 5'end, expressed in shoot at 7d after germination.
FS065280.1:393-412
GAAGTTAAACTCTTTTGTAATATGTAAAAT393GGGTTGATCGTGTTTTCGTTTCTATAAATCTAGTACTACGTGCTGTAAGT
Solanum melongena mRNA, clone: SHT06N16, 5'end, expressed in shoot at 7d after germination.
FS066451.1:391-410
GAAGTTAAACTCTTTTGTAATATGTAAAAT391GGGTTGATCGTGTTTTCGTTTCTATAAATCTAGTACTACGTGCTGTAAGT
Solanum melongena mRNA, clone: SHT07F10, 5'end, expressed in shoot at 7d after germination.
FS066713.1:393-412
GAAGTTAAACTCTTTTGTAATATGTAAAAT393GGGTTGATCGTGTTTTCGTTTCTATAAATCTGGTACTACGTGCCGTAAGT
Solanum melongena mRNA, clone: SHT07K03, 5'end, expressed in shoot at 7d after germination.
FS066838.1:138-157
GAAGTTAAACTCTTTTGTAATATGTAAAAT138GGGTTGATCGTGTTTTCGTTTCTATAAATCTAGTACTACGTGCTGTAAGT
Solanum stoloniferum granule-bound starch synthase (waxy) gene, partial sequence.
AY875532.1:319-338
CTGTTCGTTTCTTTCACTGCTATAAACGTG319GGGTTGATCGTGTTTTCGTTGACCACCCAATGTTCTTGGAGAAAGTAAGC
Solanum stoloniferum granule-bound starch synthase (waxy) gene, partial sequence.
AY875533.1:319-338
CTGTTCGTTTCTTTCACTGCTATAAACGTG319GGGTTGATCGTGTTTTCGTTGACCACCCAATGTTCTTGGAGAAAGTAAGC
Solanum ptychanthum voucher Olmstead S-94 WTU granule-bound starch synthase (GBSSI) gene, exons 2 through 10 and partial cds.
AY996457.1:160-179
TTGTTCGTTTCTTTCACTGCTATAAACGTG160GGGTTGATCGTGTTTTCGTTGACCACCCAATGTTCTTGGAGAAAGTAAGC
Solanum aloysiifolium isolate LB856 waxy gene, exons 3 through 10 and partial cds.
KF546124.1:127-146
TTGTTCGTTTCTTTCACTGCTATAAACGTG127GGGTTGATCGTGTTTTCGTTGACCACCCAATGTTCTTGGAGAAAGTAAGC
Solanum nigrescens isolate LB70 waxy gene, exons 3 through 10 and partial cds.
KF546129.1:127-146
TTGTTCGTTTCTTTCACTGCTATAAACGTG127GGGTTGATCGTGTTTTCGTTGACCACCCAATGTTCTTGGAGAAAGTAAGC
Solanum ptychanthum isolate LB3058 waxy gene, exons 3 through 10 and partial cds.
KF546131.1:127-146
TTGTTCGTTTCTTTCACTGCTATAAACGTG127GGGTTGATCGTGTTTTCGTTGACCACCCAATGTTCTTGGAGAAAGTAAGC
Solanum americanum isolate LB1015 granule-bound starch synthase (waxy) gene, exons 3 through 11 and partial cds.
KT820845.1:133-152
TTGTTCGTTTCTTTCACTGCTATAAACGTG133GGGTTGATCGTGTTTTCGTTGACCACCCAATGTTCTTGGAGAAAGTAAGC
Solanum annuum isolate GB2176 granule-bound starch synthase (waxy) gene, exons 3 through 9 and partial cds.
KT820846.1:125-144
TTGTTCGTTTCTTTCACTGCTATAAACGTG125GGGTTGATCGTGTTTTCGTTGACCACCCAATGTTCTTGGAGAAAGTAAGC
Solanum douglasii isolate WICK34 granule-bound starch synthase (waxy) gene, exons 3 through 11 and partial cds.
KT820851.1:133-152
TTGTTCGTTTCTTTCACTGCTATAAACGTG133GGGTTGATCGTGTTTTCGTTGACCACCCAATGTTCTTGGAGAAAGTAAGC
Solanum glandulosipilosum isolate LB593 granule-bound starch synthase (waxy) gene, exons 3 through 11 and partial cds.
KT820859.1:133-152
TTGTTCGTTTCTTTCACTGCTATAAACGTG133GGGTTGATCGTGTTTTCGTTGACCACCCAATGTTCTTGGAGAAAGTAAGC
Solanum grandidentatum isolate LB3056 granule-bound starch synthase (waxy) gene, exons 3 through 11 and partial cds.
KT820861.1:145-164
TTGTTCGTTTCTTTCACTGCTATAAACGTG145GGGTTGATCGTGTTTTCGTTGACCACCCAATTTTCTTGGAGAAAGTAAGC
Solanum interius isolate LB111 granule-bound starch synthase (waxy) gene, exons 3 through 11 and partial cds.
KT820865.1:133-152
TTGTTCGTTTCTTTCACTGCTATAAACGTG133GGGTTGATCGTGTTTTCGTTGACCACCCAATGTTCTTGGAGAAAGTAAGC
Solanum nigrescens isolate LB70 granule-bound starch synthase (waxy) gene, exons 3 through 11 and partial cds.
KT820866.1:133-152
TTGTTCGTTTCTTTCACTGCTATAAACGTG133GGGTTGATCGTGTTTTCGTTGACCACCCAATGTTCTTGGAGAAAGTAAGC
Solanum opacum isolate LB106 granule-bound starch synthase (waxy) gene, exons 3 through 11 and partial cds.
KT820869.1:145-164
TTGTTCGTTTCTTTCACTGCTATAAACGTG145GGGTTGATCGTGTTTTCGTTGACCACCCAATGTTCTTGGAGAAAGTAAGC
Solanum ptychanthum isolate LB3058 granule-bound starch synthase (waxy) gene, exons 3 through 11 and partial cds.
KT820875.1:133-152
TTGTTCGTTTCTTTCACTGCTATAAACGTG133GGGTTGATCGTGTTTTCGTTGACCACCCAATGTTCTTGGAGAAAGTAAGC
Solanum salicifolium isolate LB545 granule-bound starch synthase (waxy) gene, exons 3 through 11 and partial cds.
KT820881.1:129-148
TTGTTCGTTTCTTTCACTGCTATAAACGTG129GGGTTGATCGTGTTTTCGTTGACCACCCAATGTTCTTGGAGAAAGTAAGC
Solanum scabrum isolate LB257 granule-bound starch synthase (waxy) gene, exons 3 through 11 and partial cds.
KT820883.1:156-175
TTGTTCGTTTCTTTCACTGCTATAAACGTG156GGGTTGATCGTGTTTTCGTTGACCACCCAATGTTCTTGGAGAAAGTAAGC
Sclerophylax adnatifolia granule-bound starch synthase (waxy) gene, exons 3 through 10 and partial cds.
MT196374.1:129-148
CTGTCCGTTTCTTTCACTGCTATAAACGTG129GGGTTGATCGTGTTTTCGTTGACCACCCAATGTTCTTGGAGAAAGTAAGC
Sclerophylax adnatifolia granule-bound starch synthase (waxy) gene, exons 3 through 10 and partial cds.
MT196377.1:129-148
CTGTCCGTTTCTTTCACTGCTATAAACGTG129GGGTTGATCGTGTTTTCGTTGACCACCCAATGTTCTTGGAGAAAGTAAGC
UNVERIFIED: Solanum douglasii voucher BM:Wicklund 34 granule-bound starch synthase-like gene, partial sequence.
MW556064.1:133-152
TTGTTCGTTTCTTTCACTGCTATAAACGTG133GGGTTGATCGTGTTTTCGTTGACCACCCAATGTTCTTGGAGAAAGTAAGC
UNVERIFIED: Solanum juninense voucher NY:Tepe 2291 granule-bound starch synthase-like gene, partial sequence.
MW556082.1:145-164
TTGTTCGTTTCTTTCACTGCTATAAACGTG145GGGTTGATCGTGTTTTCGTTGACCACCCAATTTTCTTGGAGAAAGTAAGC
UNVERIFIED: Solanum macrotonum voucher UT:Tepe 2579 granule-bound starch synthase-like gene, partial sequence.
MW556095.1:21-40
CTTTCACTGCTATAAACGTG21GGGTTGATCGTGTTTTCGTTGACCACCCAATTTTCTTGGAGAAAGTAAGC
UNVERIFIED: Solanum physalifolium voucher UT:Bohs 3023 granule-bound starch synthase-like gene, partial sequence.
MW556101.1:141-160
TTGTTCGTTTCTTTCACTGCTATAAACGTG141GGGTTGATCGTGTTTTCGTTGACCACCCAATGTTCTTGGAGAAAGTAAGC
UNVERIFIED: Solanum pseudoamericanum voucher BM:Soukup 4611 granule-bound starch synthase-like gene, partial sequence.
MW556104.1:133-152
TTGTTCGTTTCTTTCACTGCTATAAACGTG133GGGTTGATCGTGTTTTCGTTGACCACCCAATGTTCTTGGAGAAAGTAAGC
UNVERIFIED: Solanum salamancae voucher CORD:Barboza 2182 granule-bound starch synthase-like gene, partial sequence.
MW556108.1:125-144
CTGTTCGTTTCTTTCACTGCTATAAACGTG125GGGTTGATCGTGTTTTCGTTGACCACCCAATGTTCTTGGAGAAAGTAAGC
UNVERIFIED: Solanum salicifolium voucher NY:Nee & Bohs 50848 granule-bound starch synthase-like gene, partial sequence.
MW556109.1:125-144
TTGTTCGTTTCTTTCACTGCTATAAACGTG125GGGTTGATCGTGTTTTCGTTGACCACCCAATGTTCTTGGAGAAAGTAAGC

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/AACGAAAACACGATCAACCC
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : AACGAAAACACGATCAACCC | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.737 | 0.728 | search_plus_done; http://172.18.8.135:50400/match?q=AACGAAAACACGATCAACCC&k=0&no_gap=0&offset=0&limit=50
1.245 | 0.508 | search_minus_done; http://172.18.8.135:50400/match?q=GGGTTGATCGTGTTTTCGTT&k=0&no_gap=0&offset=0&limit=40
1.265 | 0.020 | cgi_end;

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