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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-03-14 20:59:32, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Coregonus sp. 'balchen' genome assembly, chromosome: 18.
LR778270.1:35693140-35693159
GCTGCCTTTGTTATATTAAGGTCACTAACC35693140AACGCTCCCTTAACACCCTTCCCTTCCCCTCAGAGTGGAACATTCCAGGG
0190050 Brassica napus Apical meristem Brassica napus cDNA, mRNA sequence.
EV092664.1:755-774
GTTATGAAAAGAACCTCACCCATTACAAAC755AACGCTCCCTTAACACCCTTCTCAGATACTAGCTCGGAGAGGGTTCTTCG
RR1CE96JQ RR1(CS) Raphanus raphanistrum subsp. maritimus cDNA 3', mRNA sequence.
EX752574.1:556-575
GTAATGTAAAGAACCTCACCCATTACAAAC556AACGCTCCCTTAACACCCTTCTCAGATAATAGCTCGGAGATTGTTGTTCG
RR4DD78JQ RR4(PB) Raphanus raphanistrum subsp. landra cDNA 3', mRNA sequence.
EY918277.1:565-584
GTTATGTAAAGAACCTCACCCATTACAAAC565AACGCTCCCTTAACACCCTTCTCAGATAATAGCTCGGAGATTGTTGTTCG
TSA: Raphanus sativus var. sativus RNA, contig: WG3_903.
FX665052.1:556-575
GTAATGTAAAGAACCTCACCCATTACAAAC556AACGCTCCCTTAACACCCTTCTCAGATAATAGCTCGGAGATTGTTGTTCG
TSA: Brassica rapa x Raphanus sativus RNA, contig: BB3_22535.
FX736348.1:441-460
GTTATGAAAAGAACCTCACCCATTACAAAC441AACGCTCCCTTAACACCCTTCTCAGATACTAGCTCGGAGAGGGTTCTTCG
TSA: Raphanus sativus RS06701 mRNA sequence.
JT791248.1:450-469
GTAATGTAAAGAACCTCACCCATTACAAAC450AACGCTCCCTTAACACCCTTCTCAGATAATAGCTCGGAGATTGTTGTTCG
Raphanus sativus genome assembly, chromosome: 1.
LR778310.1:57772707-57772726
GTTATGTAAAGAACCTCACCCATTACAAAC57772707AACGCTCCCTTAACACCCTTCTCAGATAATAGCTCGGAGAAAGTTGTTCG
Raphanus sativus genome assembly, chromosome: 6.
OY743212.1:57772707-57772726
GTTATGTAAAGAACCTCACCCATTACAAAC57772707AACGCTCCCTTAACACCCTTCTCAGATAATAGCTCGGAGAAAGTTGTTCG
RR1CE96TF RR1(CS) Raphanus raphanistrum subsp. maritimus cDNA 5', mRNA sequence.
EX748714.1:375-394
CGAACAACAATCTCCGAGCTATTATCTGAG375AAGGGTGTTAAGGGAGCGTTGTTTGTAATGGGTGAGGTTCTTTACATTAC
RR4DD78TF RR4(PB) Raphanus raphanistrum subsp. landra cDNA 5', mRNA sequence.
EY922290.1:605-624
CGAACAACAATCTCCGAGCTATTATCTGAG605AAGGGTGTTAAGGGAGCGTTGTTTGTAATGGGTGAGGTTCTTT
Raphanus sativus mRNA, clone: RSCS11L17, 5' end sequence.
FY449906.1:311-330
CGAACAACAATCTCCGAGCTATTATCTGAG311AAGGGTGTTAAGGGAGCGTTGTTTGTAATGGGTGAGGTTCTTTACATAAC
TSA: Brassica rapa x Raphanus sativus RNA, contig: BB3_46364.
FX768677.1:62-81
CGAACAACAATCTCCGAGCTATTATCTGAG62AAGGGTGTTAAGGGAGCGTTGTTTGTAATGGGTGAGGTTCTTTACATTAC
Raphanus sativus cultivar WK10039 clone RsH054D04, *** SEQUENCING IN PROGRESS ***, 9 ordered pieces.
AC255276.1:54658-54677
CGAACAACAATCTCCGAGCTATTATCTGAG54658AAGGGTGTTAAGGGAGCGTTGTTTGTAATGGGTGAGGTTCTTTACATTAC
Thlaspi arvense genome assembly, chromosome: 4.
OU466860.2:1040303-1040322
CGAGCAACGCTCTCGGAGCTATTATCTGAG1040303AAGGGTGTTAAGGGAGCGTTGTTTGTAATGGGTGAGGTTTTAATCATAAC
Draba incana genome assembly, chromosome: 1.
OY755202.1:2255931-2255950
CGAAAAACGCTTTCCGAGCTACTATCTGAT2255931AAGGGTGTTAAGGGAGCGTTGTTTGTAATTGGTGAGGTTCTTTTTATAAC
Draba incana genome assembly, chromosome: 3.
OY755204.1:1769268-1769287
CGAAAAAAGCTTTCCGAGATATTATCTGAT1769268AAGGGTGTTAAGGGAGCGTTGTTTGTAATTGGTGAGGTTCTTTTCATAAC
Pieris napi genome assembly, chromosome: 4.
FR997698.1:3016687-3016706
ATTTATTTAATCGTTAAGGGGAAATACAAC3016687AAGGGTGTTAAGGGAGCGTTCAAGTATTACGTAACGCAATTTTTGGAGAT
Diarsia brunnea genome assembly, chromosome: 22.
OX459018.1:7599166-7599185
ATCGTTAGATGTGTTCAGGGGTATGGAGAA7599166AAGGGTGTTAAGGGAGCGTTCAAGTATGACGTAACGCAATTTTTTGACAT

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/AACGCTCCCTTAACACCCTT
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : AACGCTCCCTTAACACCCTT | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.388 | 0.379 | search_plus_done; http://172.18.8.135:50400/match?q=AACGCTCCCTTAACACCCTT&k=0&no_gap=0&offset=0&limit=50
0.833 | 0.445 | search_minus_done; http://172.18.8.135:50400/match?q=AAGGGTGTTAAGGGAGCGTT&k=0&no_gap=0&offset=0&limit=41
0.839 | 0.006 | cgi_end;

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