GGGenome Help | English

データベース：
 

ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-03 11:44:19, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB058M10, complete sequence.
AC189405.2:72621-72640
TAAAGCAAAGAAAGTAGCACAGAACACACT72621AACGTCCATATTGGTGATCGGTAGGTATTCCCATCAACATTATAACGCCA
Brassica napus cultivar Xiang5A chromosome 15.
CP123890.1:20544891-20544910
TTAAAGCAAAGAAAGTAGCACAGAAACACT20544891AACGTCCATATTGGTGATCGGTGGATATTCACATCAACATTATAACGCCA
Barbarea vulgaris genome assembly, chromosome: 3.
OY763889.1:23621543-23621562
AAAGCAAAGAAAAAGTAACACAGAAACACT23621543AACGTCCATATTGGTGATCGGTAGATATTCACAACAACTTTATAATGACC
Brassica oleracea ATP-sulfurylase precursor (ASBo) gene, complete cds.
U69694.1:162-181
TAAAGCAAAGAAAGTTTCACAGAACACACT162AACGTCCATATTGGTGATCGGTGGATATTCACATCAACATTATAACGCCA
Brassica rapa subsp. pekinensis clone KBrB032F05, complete sequence.
FP102466.1:115666-115685
TGGCGTTATAATGTTGATGGGAATACCTAC115666CGATCACCAATATGGACGTTAGTGTGTTCTGTGCTACTTTCTTTGCTTTA
Brassica napus genome assembly, chromosome: C08.
HG994372.1:21209397-21209416
TGGCGTTATAATGTTGATGTGAATATCCAC21209397CGATCACCAATATGGACGTTAGTGTTTCTGTGCTACTTTCTTTGCTTTAA
Brassica oleracea HDEM genome, scaffold: C8.
LR031879.1:30357119-30357138
TGGCGTTATAATGTTGATGTGAATATCCAC30357119CGATCACCAATATGGACGTTAGTGTTTCTGTGCTACTTTCTTTGCTTTAA
Cardamine flexuosa genome assembly, chromosome: 1.
OY743214.1:7004740-7004759
AGTCATTATATAGTTGTTGTGAATATCTAC7004740CGATCACCAATATGGACGTTATTGTCGTTCTCTGTTACTTTTTCTTTGCT
Nasturtium officinale genome assembly, chromosome: 2.
OY978500.1:5744398-5744417
GAGTGAGTGGGTCATTATGTGAATATCTAC5744398CGATCACCAATATGGACGTTAGTGTTTATGTGTTACTTTTCTTTGCTTTA
Nasturtium officinale genome assembly, chromosome: 2.
OY978500.1:5785676-5785695
GAGTGAGTGGGTCATTATGTGAATATCTAC5785676CGATCACCAATATGGACGTTAGTGTTTATGTGTTACTTTTCTTTGCTTTA
Cardamine chenopodiifolia genome assembly, chromosome: 17.
OZ000475.1:5822472-5822491
TTACTCTATATAGTTGTTGTGAATATCTAA5822472CGATCACCAATATGGACGTTAGTGTTTCTGTGTTACCTTTTCTTTGCTTT

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/AACGTCCATATTGGTGATCG
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : AACGTCCATATTGGTGATCG | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.168 | 0.160 | search_plus_done; http://172.18.8.135:50400/match?q=AACGTCCATATTGGTGATCG&k=0&no_gap=0&offset=0&limit=50
0.255 | 0.087 | search_minus_done; http://172.18.8.135:50400/match?q=CGATCACCAATATGGACGTT&k=0&no_gap=0&offset=0&limit=46
0.260 | 0.005 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).