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Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-04 02:03:56, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

WS02910.B21_O01 SS-IB-A-FL-15 Picea sitchensis cDNA clone WS02910_O01 5, mRNA sequence.
DR496778.1:699-718
GAATGAGCTGTTATTTATAATGAAATTCTG699AACGTTCTATTGGCCAGTCCTGCCTCTCAGGTTAGCTCAGGGCAAATATG
Picea sitchensis clone WS02910_O01 unknown mRNA.
EF678261.1:699-718
GAATGAGCTGTTATTTATAATGAAATTCTG699AACGTTCTATTGGCCAGTCCTGCCTCTCAGGTTAGCTCAGGGCAAATATG
Picea abies leucoanthocyanidin reductase 3 (LAR3) gene, LAR3-120BB allele, complete cds.
KT592308.1:1043-1062
GAATGAGCTGTTATTTATAATGAAATTCTG1043AACGTTCTATTGGCCAGTCCTGCCTCTCAGGTTAGCTCAGGGCAAATATG
Picea abies leucoanthocyanidin reductase 3 (LAR3) gene, LAR3-157BB allele, complete cds.
KT592309.1:1043-1062
GAATGAGCTGTTATTTATAATGAAATTCTG1043AACGTTCTATTGGCCAGTCCTGCCTCTCAGGTTAGCTCAGGGCAAATATG
Picea abies leucoanthocyanidin reductase 3 (LAR3) gene, LAR3-162BB allele, complete cds.
KT592310.1:1043-1062
GAATGAGCTGTTATTTATAATGAAATTCTG1043AACGTTCTATTGGCCAGTCCTGCCTCTCAGGTTAGCTCAGGGCAAATATG
Picea abies leucoanthocyanidin reductase 3 (LAR3) gene, LAR3-160BB allele, complete cds.
KT592311.1:1043-1062
GAATGAGCTGTTATTTATAATGAAATTCTG1043AACGTTCTATTGGCCAGTCCTGCCTCTCAGGTTAGCTCAGGGCAAATATG
Picea abies leucoanthocyanidin reductase 3 (LAR3) gene, LAR3-174BB allele, complete cds.
KT592312.1:1043-1062
GAATGAGCTGTTATTTATAATGAAATTCTG1043AACGTTCTATTGGCCAGTCCTGCCTCTCAGGTTAGCTCAGGGCAAATATG
Picea abies leucoanthocyanidin reductase 3 (LAR3) gene, LAR3-178BB allele, complete cds.
KT592313.1:1043-1062
GAATGAGCTGTTATTTATAATGAAATTCTG1043AACGTTCTATTGGCCAGTCCTGCCTCTCAGGTTAGCTCAGGGCAAATATG
Picea abies leucoanthocyanidin reductase 3 (LAR3) gene, LAR3-41BB allele, complete cds.
KT592314.1:1043-1062
GAATGAGCTGTTATTTATAATGAAATTCTG1043AACGTTCTATTGGCCAGTCCTGCCTCTCAGGTTAGCTCAGGGCAAATATG
Picea abies leucoanthocyanidin reductase 3 (LAR3) gene, LAR3-68BB allele, complete cds.
KT592315.1:1043-1062
GAATGAGCTGTTATTTATAATGAAATTCTG1043AACGTTCTATTGGCCAGTCCTGCCTCTCAGGTTAGCTCAGGGCAAATATG
Picea abies leucoanthocyanidin reductase 3 (LAR3) gene, LAR3-183BB allele, complete cds.
KT592316.1:1043-1062
GAATGAGCTGTTATTTATAATGAAATTCTG1043AACGTTCTATTGGCCAGTCCTGCCTCTCAGGTTAGCTCAGGGCAAATATG
Picea abies leucoanthocyanidin reductase 3 (LAR3) gene, LAR3-51BB allele, complete cds.
KT592317.1:1043-1062
GAATGAGCTGTTATTTATAATGAAATTCTG1043AACGTTCTATTGGCCAGTCCTGCCTCTCAGGTTAGCTCAGGGCAAATATG
Picea abies leucoanthocyanidin reductase 3 (LAR3) gene, LAR3-69BB allele, complete cds.
KT592318.1:1043-1062
GAATGAGCTGTTATTTATAATGAAATTCTG1043AACGTTCTATTGGCCAGTCCTGCCTCTCAGGTTAGCTCAGGGCAAATATG
Picea abies leucoanthocyanidin reductase 3 (LAR3) gene, LAR3-127BB allele, complete cds.
KT592319.1:1043-1062
GAATGAGCTGTTATTTATAATGAAATTCTG1043AACGTTCTATTGGCCAGTCCTGCCTCTCAGGTTAGCTCAGGGCAAATATG
Picea abies leucoanthocyanidin reductase 3 (LAR3) gene, LAR3-134BB allele, complete cds.
KT592320.1:1043-1062
GAATGAGCTGTTATTTATAATGAAATTCTG1043AACGTTCTATTGGCCAGTCCTGCCTCTCAGGTTAGCTCAGGGCAAATATG
Picea abies leucoanthocyanidin reductase 3 (LAR3) gene, LAR3-52BB allele, complete cds.
KT592321.1:1043-1062
GAATGAGCTGTTATTTATAATGAAATTCTG1043AACGTTCTATTGGCCAGTCCTGCCTCTCAGGTTAGCTCAGGGCAAATATG
Picea abies leucoanthocyanidin reductase 3 (LAR3) gene, LAR3-162AA2 allele, complete cds.
KT592325.1:1043-1062
GAATGAGCTGTTATTTATAATGAAATTCTG1043AACGTTCTATTGGCCAGTCCTGCCTCTCAGGTTAGCTCAGGGCAAATATG
Picea abies leucoanthocyanidin reductase 3 (LAR3) gene, LAR3-174AA2 allele, complete cds.
KT592326.1:1043-1062
GAATGAGCTGTTATTTATAATGAAATTCTG1043AACGTTCTATTGGCCAGTCCTGCCTCTCAGGTTAGCTCAGGGCAAATATG
Picea abies leucoanthocyanidin reductase 3 (LAR3) gene, LAR3-41AA2 allele, complete cds.
KT592327.1:1043-1062
GAATGAGCTGTTATTTATAATGAAATTCTG1043AACGTTCTATTGGCCAGTCCTGCCTCTCAGGTTAGCTCAGGGCAAATATG
Picea abies leucoanthocyanidin reductase 3 (LAR3) gene, LAR3-120AA2 allele, complete cds.
KT592328.1:1043-1062
GAATGAGCTGTTATTTATAATGAAATTCTG1043AACGTTCTATTGGCCAGTCCTGCCTCTCAGGTTAGCTCAGGGCAAATATG
Picea abies leucoanthocyanidin reductase 3 (LAR3) gene, LAR3-120AA allele, complete cds.
KT592329.1:1043-1062
GAATGAGCTGTTATTTATAATGAAATTCTG1043AACGTTCTATTGGCCAGTCCTGCCTCTCAGGTTAGCTCAGGGCAAATATG
Picea abies leucoanthocyanidin reductase 3 (LAR3) gene, LAR3-178AA allele, complete cds.
KT592330.1:1043-1062
GAATGAGCTGTTATTTATAATGAAATTCTG1043AACGTTCTATTGGCCAGTCCTGCCTCTCAGGTTAGCTCAGGGCAAATATG
Picea abies leucoanthocyanidin reductase 3 (LAR3) gene, LAR3-127AA allele, complete cds.
KT592331.1:1043-1062
GAATGAGCTGTTATTTATAATGAAATTCTG1043AACGTTCTATTGGCCAGTCCTGCCTCTCAGGTTAGCTCAGGGCAAATATG
Picea abies leucoanthocyanidin reductase 3 (LAR3) gene, LAR3-134AA allele, complete cds.
KT592332.1:1043-1062
GAATGAGCTGTTATTTATAATGAAATTCTG1043AACGTTCTATTGGCCAGTCCTGCCTCTCAGGTTAGCTCAGGGCAAATATG
Picea abies leucoanthocyanidin reductase 3 (LAR3) gene, LAR3-160AA allele, complete cds.
KT592333.1:1043-1062
GAATGAGCTGTTATTTATAATGAAATTCTG1043AACGTTCTATTGGCCAGTCCTGCCTCTCAGGTTAGCTCAGGGCAAATATG
Picea abies leucoanthocyanidin reductase 3 (LAR3) gene, LAR3-162AA allele, complete cds.
KT592334.1:1043-1062
GAATGAGCTGTTATTTATAATGAAATTCTG1043AACGTTCTATTGGCCAGTCCTGCCTCTCAGGTTAGCTCAGGGCAAATATG
Picea abies leucoanthocyanidin reductase 3 (LAR3) gene, LAR3-174AA allele, complete cds.
KT592335.1:1043-1062
GAATGAGCTGTTATTTATAATGAAATTCTG1043AACGTTCTATTGGCCAGTCCTGCCTCTCAGGTTAGCTCAGGGCAAATATG
Picea abies leucoanthocyanidin reductase 3 (LAR3) gene, LAR3-183AA allele, complete cds.
KT592336.1:1043-1062
GAATGAGCTGTTATTTATAATGAAATTCTG1043AACGTTCTATTGGCCAGTCCTGCCTCTCAGGTTAGCTCAGGGCAAATATG
Picea abies leucoanthocyanidin reductase 3 (LAR3) gene, LAR3-41AA allele, complete cds.
KT592337.1:1043-1062
GAATGAGCTGTTATTTATAATGAAATTCTG1043AACGTTCTATTGGCCAGTCCTGCCTCTCAGGTTAGCTCAGGGCAAATATG
Picea abies leucoanthocyanidin reductase 3 (LAR3) gene, LAR3-69AA allele, complete cds.
KT592338.1:1043-1062
GAATGAGCTGTTATTTATAATGAAATTCTG1043AACGTTCTATTGGCCAGTCCTGCCTCTCAGGTTAGCTCAGGGCAAATATG
Picea abies leucoanthocyanidin reductase 3 (LAR3) gene, LAR3-68AA allele, complete cds.
KT592339.1:1043-1062
GAATGAGCTGTTATTTATAATGAAATTCTG1043AACGTTCTATTGGCCAGTCCTGCCTCTCAGGTTAGCTCAGGGCAAATATG
Picea abies leucoanthocyanidin reductase 3 (LAR3) gene, LAR3-157AA allele, complete cds.
KT592340.1:1043-1062
GAATGAGCTGTTATTTATAATGAAATTCTG1043AACGTTCTATTGGCCAGTCCTGCCTCTCAGGTTAGCTCAGGGCAAATATG
Picea abies leucoanthocyanidin reductase 3 (LAR3) gene, LAR3-51AA allele, complete cds.
KT592341.1:1043-1062
GAATGAGCTGTTATTTATAATGAAATTCTG1043AACGTTCTATTGGCCAGTCCTGCCTCTCAGGTTAGCTCAGGGCAAATATG
Picea abies leucoanthocyanidin reductase 3 (LAR3) gene, LAR3-52AA allele, complete cds.
KT592342.1:1043-1062
GAATGAGCTGTTATTTATAATGAAATTCTG1043AACGTTCTATTGGCCAGTCCTGCCTCTCAGGTTAGCTCAGGGCAAATATG
Ptilodon capucinus genome assembly, chromosome: 17.
OU611824.1:5697681-5697700
ATACTTATAAATGTTAGAAAAATAAAACAA5697681GGACTGGCCAATAGAACGTTTCGTTTTCTGACTACTGAGAAGTTATTTAT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/AACGTTCTATTGGCCAGTCC
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : AACGTTCTATTGGCCAGTCC | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.310 | 0.301 | search_plus_done; http://172.18.8.135:50400/match?q=AACGTTCTATTGGCCAGTCC&k=0&no_gap=0&offset=0&limit=50
0.367 | 0.057 | search_minus_done; http://172.18.8.135:50400/match?q=GGACTGGCCAATAGAACGTT&k=0&no_gap=0&offset=0&limit=16
0.368 | 0.001 | cgi_end;

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