GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-19 15:49:41, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

WS00922.B21_F24 IS-B-N-A-10 Picea engelmannii x Picea glauca cDNA clone WS00922_F24 3', mRNA sequence.
CO212550.1:562-581
CTGTCAGCACTGTACGATAAGAGCTGAATC562AACTCACCATGTTAGAAGAAACTGTGTGATTTGAAAAAAGCATCAAAAC
WS00743.C21_O08 WS-PS-N-A-8 Picea glauca cDNA clone WS00743_O08 3, mRNA sequence.
DR576595.1:581-600
CTGTCAGCACTGTACGATAAGAGCTGAATC581AACTCACCATGTTAGAAGAAACTGTGTGATTTGAAAAAAGCATCAAAATT
TSA: Pinus sylvestris mRNA sequence, contig FTO7S8C02IVD7X.
FN935550.1:52-71
CTGTCAGCACTGTACTATAAGAGCTGAATC52AACTCACCATGTTAGAAGAAACTGTGTGATTTGAAAAAGGCATCAAAATT
Thysanoteuthis rhombus genome assembly, chromosome: 44.
OY735241.1:409896-409915
CTGCTCGATAAATCTGAGTCTCATTTTTTG409896AACTCACCATGTTAGAAGAATAAGGAAGGCTAAGAAATTACAGTCTCCAA
Maratus michaelseni genome assembly, chromosome: X2.
OZ007599.1:104309494-104309513
AGAGATCAAAAACAGGTGTGGACCTCAGAG104309494AACTCACCATGTTAGAAGAAAGGATTTTGGCCCTTATAGGGCTAGATGCC
Maratus michaelseni genome assembly, chromosome: X2.
OZ007599.1:104312756-104312775
AGAGATCAAAAACAGGTGTGGACCTCAGAG104312756AACTCACCATGTTAGAAGAAAGGATTTTGGCCCTTATAGGGCTAGATGCC
NXSI_043_H12_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA clone NXSI_043_H12 5', mRNA sequence.
BF609551.1:486-505
AATTTTGATGCCTTTTTCAAACCACACAGT486TTCTTCTAACATGGTGAGTTGATTCAGCTCTTNNA
Pinus pinaster xylem EST, clone PP042E07.
BX250888.1:249-268
AATTTTGATGCCTTTTTCAAATCACACAGT249TTCTTCTAACATGGTGAGTTGATTCAGCTCTTATAGTCAGTGCTGACAGA
Pinus pinaster xylem EST, clone PP068F12.
BX252659.1:249-268
AATTTTGATGCCTTTTTCAAATCACACAGT249TTCTTCTAACATGGTGAGTTGATTCAGCTCTTATAGTCAGTGCTGACAGA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/AACTCACCATGTTAGAAGAA
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : AACTCACCATGTTAGAAGAA | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.180 | 0.172 | search_plus_done; http://172.18.8.135:50400/match?q=AACTCACCATGTTAGAAGAA&k=0&no_gap=0&offset=0&limit=50
0.255 | 0.074 | search_minus_done; http://172.18.8.135:50400/match?q=TTCTTCTAACATGGTGAGTT&k=0&no_gap=0&offset=0&limit=44
0.257 | 0.002 | cgi_end;

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