GGGenome Help | English

データベース：
 

ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-03-15 15:00:58, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Sciurus vulgaris genome assembly, chromosome: 18.
LR738629.1:29638850-29638869
GATTTGTGTCTTTTGACCAATCTCTCTCCA29638850AACTCATCCATTCCACCACCACTCACACTCTTTAGCTGCCTGCATACATT
Medicago lupulina genome assembly, chromosome: 6.
OY283144.1:22800631-22800650
GAACGAACCTTGTAACCTAATGCTGCTAAT22800631AACTCATCCATTCCACCACCGTTGGTTTCTTTTTCTTCTCTCCACATGTT
Oscheius tipulae isolate CEW1 chromosome X.
CP059033.1:7043137-7043156
AGCTCTTCCGCGTCTTCATAGGCATCATAG7043137AACTCATCCATTCCACCACCAGACATGCTGTCATCCATCAGACAGAAGAA
Aplidium turbinatum genome assembly, chromosome: 8.
OU964925.1:31713056-31713075
TCAGGACACACGTAGCCTACTAGGCCTACT31713056AACTCATCCATTCCACCACCCACCAAGACAAGAAACAATAACTTAAACTG
Phorcus lineatus genome assembly, chromosome: 5.
OV121085.1:49352785-49352804
TTGAAGAAGAAACAAAATGGCAGCATCTTA49352785AACTCATCCATTCCACCACCCATTCCTCTTTAATCATAATCCTTAATTTC
Deilephila elpenor genome assembly, chromosome: 7.
OX457101.1:6990026-6990045
TTCACATTTTTCTTCCTTTATTACATGTTT6990026AACTCATCCATTCCACCACCGCGGTGTCAATTCTTGTAAACCATCTTCAT
Sciurus carolinensis genome assembly, chromosome: 18.
LR738608.1:11181801-11181820
AGTGTATGCAGGCAGCTAAAGAGTGTGAGT11181801GGTGGTGGAATGGATGAGTTTGGAGAGATATTGGTCAAAGGACACAAATC
Salmo trutta genome assembly, chromosome: 14.
LR584411.1:31640293-31640312
GTGTTCAGTATAAATGTTACCTACCCAATT31640293GGTGGTGGAATGGATGAGTTCAGGTCAGGTACATGCAGTATTTAAACATT
Coregonus sp. 'balchen' genome assembly, chromosome: 4.
LR778256.1:76977702-76977721
AATAATAACACAAGGTTGGTACTATACAAA76977702GGTGGTGGAATGGATGAGTTACCCCCATACAATGTAAGACCTTGGGAAAA
Trifolium repens mRNA, clone: WCC15i10_053, unspecified EST.
FY459383.1:325-344
CAAAACATGTGGAGAGAAGAAAAAGACAAC325GGTGGTGGAATGGATGAGTTATTAGCAGCATTAGGTTACAAAGTTCGTTC
Botrytis cinerea B05.10 chromosome BCIN15, complete sequence.
CP009819.1:144499-144518
CTGATGAGGCTTATTGTTTTAGCCAGAACA144499GGTGGTGGAATGGATGAGTTTGAGATCTTGAAGAAATACTTCTCTAGTTC
Botrytis cinerea strain Vv3 chromosome 15.
CP080975.1:123050-123069
CTGATGAGGCTTATTGTTTTAGCCAGAACA123050GGTGGTGGAATGGATGAGTTTGAGATCTTGAAGAAATACTTCTCTAGTTC
Botrytis cinerea strain Sl3 chromosome 15.
CP080993.1:152333-152352
CTGATGAGGCTTATTGTTTTAGCCAGAACA152333GGTGGTGGAATGGATGAGTTTGAGATCTTGAAGAAATACTTCTCTAGTTC
Trifolium repens isolate ACLI19 chromosome 03_Occ.
CP125840.1:13689516-13689535
CAAAACATGTGGAGAGAAGAAAAAGACAAC13689516GGTGGTGGAATGGATGAGTTATTAGCAGCATTAGGTTACAAAGTTCGTTC
Trifolium repens isolate ACLI19 chromosome 03_Pall.
CP125841.1:15740192-15740211
CAAAACATGTGGAGAGAAGAAAAAGACAAC15740192GGTGGTGGAATGGATGAGTTATTAGCAGCATTAGGTTACAAAGTTCGTTC
Botrytis fabae isolate G12 chromosome Bfab15.
CP136220.1:112167-112186
CTGATGAGGTTTATTGTTCTAGCCAGAACA112167GGTGGTGGAATGGATGAGTTTGAGATCTTGAAGAAATACTTCTCTAGTTC
Botryotinia fuckeliana T4 SuperContig_13_1 genomic supercontig.
FQ790327.1:114464-114483
CTGATGAGGCTTATTGTTTTAGCCAGAACA114464GGTGGTGGAATGGATGAGTTTGAGATCTTGAAGAAATACTTCTCTAGTTC
Medicago arabica genome assembly, chromosome: 4.
OX326967.1:38262689-38262708
AACATGTGGAGAGAAGAAAAAGAAACCAAC38262689GGTGGTGGAATGGATGAGTTATTAGCAGCATTAGGTTACAAGGTTCGTTC
Trifolium fragiferum genome assembly, chromosome: 6.
OX940794.1:17163223-17163242
CAAAACATGTGGAGAGAAGAAAAAGACAAC17163223GGTGGTGGAATGGATGAGTTATTAGCAGCATTAGGTTACAAAGTTCGTTC
Baccha elongata genome assembly, chromosome: 3.
OX578274.1:4316144-4316163
AAGGGGGAGATCAATATCTGAAATTGCTGC4316144GGTGGTGGAATGGATGAGTTGGGCGTGGTTGATTTTTATTAAGCCTGCCT
Nineta flava genome assembly, chromosome: 2.
OY986041.1:52958392-52958411
CCCTTACCATTTTAGAAATAAAACTTAGTA52958392GGTGGTGGAATGGATGAGTTACACTCACAATTTTGATTTTAAAACTCACA

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/AACTCATCCATTCCACCACC
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : AACTCATCCATTCCACCACC | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.151 | 0.142 | search_plus_done; http://172.18.8.135:50400/match?q=AACTCATCCATTCCACCACC&k=0&no_gap=0&offset=0&limit=50
0.334 | 0.183 | search_minus_done; http://172.18.8.135:50400/match?q=GGTGGTGGAATGGATGAGTT&k=0&no_gap=0&offset=0&limit=44
0.344 | 0.010 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).