GGGenome | Results

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2025-04-09 09:27:19, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and in~~dels~~ are marked in red.

Capsicum annuum cultivar G1-36576 isolate CaT2T chromosome 3.
CP124729.1:36129224-36129243

CCTTGGATATATACATTCTGAAGGAGACGG36129224AACTCGGACCTGAGAACCCTGAAGAATAATTAGATAGTATTGCGAATTAG

KS15003B08 KS15 Capsicum annuum cDNA, mRNA sequence.
GD063628.1:280-299

CTGGTTTTGCTGCTGAGGCCACAAGGATTA280AGGGTTCTCAGGTCCGAGTTCCGTCTCCTTCAGAATGTATATATCCAAGG

KS21015P08 KS21 Capsicum annuum cDNA, mRNA sequence.
GD100614.1:300-319

CTGGTTTTGCTGCTGAGGCCACAAGGATTA300AGGGTTCTCAGGTCCGAGTTCCGTCTCCTTCAGAATGTATATATCCAAGG

TSA: Capsicum annuum MGMT_Contig18604, mRNA sequence.
JW068848.1:393-412

CTGGTTTTGCTGCTGAGGCCACAAGGATTA393AGGGTTCTCAGGTCCGAGTTCCGTCTCCTTCAGAATGTATATATCCAAGG

Capsicum annuum Takanotsume DNA, chromosome 3, sequence.
AP026698.1:255171333-255171352

CTAATTCGCAATACTATCTAATTATTCTTC255171333AGGGTTCTCAGGTCCGAGTTCCGTCTCCTTCAGAATGTATATATCCAAGG

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Tab-delimited text: Open in new window | Download
You can copy-paste the result into spreadsheet softwares (e.g. Excel) or text editors.
CSV format: Open in new window | Download
You can open CSV files using spreadsheet softwares (e.g. Excel) or text editors.
BED format: Link | Download
GFF format: Link | Download
JSON format: Link | Download

Debug Info:

0.009 | 0.009 | search_start;
0.105 | 0.096 | search_plus_done; http://172.18.8.135:50400/match?q=AACTCGGACCTGAGAACCCT&k=0&no_gap=0&offset=0&limit=50
0.312 | 0.207 | search_minus_done; http://172.18.8.135:50400/match?q=AGGGTTCTCAGGTCCGAGTT&k=0&no_gap=0&offset=0&limit=49
0.315 | 0.003 | cgi_end;

GGGenome by @meso_cacase at DBCLS
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