GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-04 23:15:05, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

01-L108077-1033-120-B01-ccfw IGS-SCF-1033 Bvu-KWS2320 fosmid genomic library Beta vulgaris subsp. vulgaris genomic clone IGS-SCF-1033-120-B01 5', genomic survey sequence.
JY353440.1:603-631
TGTATGGTCGCTATTCCCTACTAGACAAAC603AACTCTATCCAATCCTCACATGTTGTGCAAGTTGCAACCGCAAATATAATAAGCAAAAG
Beta vulgaris FLC-like 1 (FL1) gene, complete cds, alternatively spliced.
EF036526.1:29189-29217
TGTATGGTCGCTATTCCCTACTAGACAAAC29189AACTCTATCCAATCCTCACATGTTGTGCAAGTTGCAACCGCAAATATAATAAGCAAAAG
Beta vulgaris subsp. vulgaris genome assembly, chromosome: 6.
OX392552.1:64007221-64007249
TGTATGGTCGCTATTCCCTACTAGACAAAC64007221AACTCTATCCAATCCTCACATGTTGTGCAAGTTGCAACCGCAAATATAATAAGCAAAAG
Beta vulgaris subsp. vulgaris genome assembly, chromosome: 6.
OX392561.1:64994084-64994112
TGTATGGTCGCTATTCCCTACTAGACAAAC64994084AACTCTATCCAATCCTCACATGTTGTGCAAGTTGCAACCGCAAATATAATAAGCAAAAG

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/AACTCTATCCAATCCTCACATGTTGTGCA
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : AACTCTATCCAATCCTCACATGTTGTGCA | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.135 | 0.126 | search_plus_done; http://172.18.8.135:50400/match?q=AACTCTATCCAATCCTCACATGTTGTGCA&k=0&no_gap=0&offset=0&limit=50
0.150 | 0.015 | search_minus_done; http://172.18.8.135:50400/match?q=TGCACAACATGTGAGGATTGGATAGAGTT&k=0&no_gap=0&offset=0&limit=46
0.150 | 0.000 | cgi_end;

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