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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-03 15:22:54, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Mus musculus BAC clone RP23-188H10 from chromosome 14, complete sequence.
AC163638.2:182706-182725
ATTGCTCTTGCTCACCCACAGCACTTAAGT182706AACTCTTGGGTGTTTCTCAATGTGTGGATGCCTATAATGGAAAGGTTTCC
Mus musculus clone RP24-216O7, WORKING DRAFT SEQUENCE, 9 unordered pieces.
AC109194.4:3918-3937
ATTGCTCTTGCTCACCCACAGCACTTAAGT3918AACTCTTGGGTGTTTCTCAATGTGTGGATGCCTATAATGGAAAGGTTTCC
Malus hybrid cultivar cultivar Flame chromosome 11.
CP141920.1:8696157-8696176
TACTCAGCTAAAATCTACAACCCCAGCACC8696157AACTCTTGGGTGTTTCTCAAGTCATTTGTGCCCAAGGAGGCAGAAGGGTT
Malus hybrid cultivar cultivar Flame chromosome 11.
CP141937.1:9545092-9545111
TACTCAGCTAAAATCTACAACCCCAGCACC9545092AACTCTTGGGTGTTTCTCAAGTCATTTGTGCCCAAGGAGGCAGAAGGGTT
Malus hybrid cultivar cultivar Royalty chromosome 11.
CP141963.1:8910972-8910991
TACTCAGCTAAAATCTACAACCCCAGCACC8910972AACTCTTGGGTGTTTCTCAAGTCATTTGTGCCCAAGGAGGCAAAAGGGTT
Malus hybrid cultivar cultivar Royalty chromosome 11.
CP141980.1:9607536-9607555
TACTCAGCTAAAATCTACAACCCCAGCACC9607536AACTCTTGGGTGTTTCTCAAGTCATTTGTGCCCAAGGAGGCAGAAGGGTT
Malus hybrid cultivar cultivar SH6 chromosome 11.
CP143368.1:8849056-8849075
TACTCAGCTAAAATCTACAACCCCAGCACC8849056AACTCTTGGGTGTTTCTCAAGTCATTTGTGCCCAAGGAGGCAGAAGGGTT
Malus hybrid cultivar cultivar SH6 chromosome 11.
CP143385.1:9013795-9013814
TACTCAGCTAAAATCTACAACCCCAGCACC9013795AACTCTTGGGTGTTTCTCAAGTCATTTGTGCCCAAGGAGGCAGAAGGGTT
Digitaria exilis genome assembly, chromosome: 6A.
LR994614.1:7870677-7870696
CAATGCTACTGCTGAAGTTATTTGGGTTCA7870677AACTCTTGGGTGTTTCTCAACCAAAGGCTGCAGTGCTTTGGTGTGATAAT
Malus sylvestris genome assembly, chromosome: 11.
OU696513.1:9007111-9007130
TACTCAGCTAAAATCTACAACCCCAGCACC9007111AACTCTTGGGTGTTTCTCAAGTCATTTGTGCCCAAGGAGGCAGAAGGGTT
Malus domestica genome assembly, chromosome: 11.
OU696687.1:9646345-9646364
TACTCAGCTAAAATCTACAACCCCAGCACC9646345AACTCTTGGGTGTTTCTCAAGTCATTTGTGCCCAAGGAGGCAGAAGGGTT
Malus domestica genome assembly, chromosome: 11.
OU744552.1:9535858-9535877
TACTCAGCTAAAATCTACAACCCCAGCACC9535858AACTCTTGGGTGTTTCTCAAGTCATTTGTGCCCAAGGAGGCAGAAGGGTT
Malus domestica genome assembly, chromosome: 11.
OU744963.1:9474661-9474680
TACTCAGCTAAAATCTACAACCCCAGCACC9474661AACTCTTGGGTGTTTCTCAAGTCATTTGTGCCCAAGGAGGCAGAAGGGTT
Malus domestica genome assembly, chromosome: 11.
OU745001.1:9410099-9410118
TACTCAGCTAAAATCTACAACCCCAGCACC9410099AACTCTTGGGTGTTTCTCAAGTCATTTGTGCCCAAGGAGGCAGAAGGGTT
Arctium minus genome assembly, chromosome: 16.
OX941095.1:42276994-42277013
GCTAAGCCAGAAAACTATGGATCTCTAACG42276994AACTCTTGGGTGTTTCTCAATTCATCATGGCCTCGATTTTTGACGGGTCC
Sphagnum contortum genome assembly, chromosome: 8.
OY987283.1:9429241-9429260
CAGAAGGCAACAGCTCATGGCAACCGGATC9429241AACTCTTGGGTGTTTCTCAATCGAAATCTTTTTACACTAGGCTGTCTATA
Mus musculus piRNA piR-105409, complete sequence.
DQ690087.1:9-28
TCCACACA9TTGAGAAACACCCAAGAGTTACT
Mus musculus genome assembly, chromosome: 14.
OW971556.1:16439093-16439112
GGAAACCTTTCCATTATAGGCATCCACACA16439093TTGAGAAACACCCAAGAGTTACTTAAGTGCTGTGGGTGAGCAAGAGCAAT
Mus musculus genome assembly, chromosome: 14.
OW971586.1:16435382-16435401
GGAAACCTTTCCATTATAGGCATCCACACA16435382TTGAGAAACACCCAAGAGTTACTTAAGTGCTGTGGGTGAGCAAGAGCAAT
Mus musculus genome assembly, chromosome: 14.
OW971607.1:16144552-16144571
GGAAACCTTTCCATTATAGGCATCCACACA16144552TTGAGAAACACCCAAGAGTTACTTAAGTGCTGTGGGTGAGCAAGAGCAAT
Mus musculus domesticus genome assembly, chromosome: 14.
OW971619.1:16278357-16278376
GGAAACCTTTCCATTATAGGCATCCACACA16278357TTGAGAAACACCCAAGAGTTACTTAAGTGCTGTGGGTGAGCAAGAGCAAT
Mus musculus genome assembly, chromosome: 14.
OW971650.1:16132769-16132788
GGAAACCTTTCCATTATAGGCATCCACACA16132769TTGAGAAACACCCAAGAGTTACTTAAGTGCTGTGGGTGAGCAAGAGCAAT
Mus musculus molossinus genome assembly, chromosome: 14.
OW971666.1:27930372-27930391
GGAAACCTTTCCATTATAGGCATCCACACA27930372TTGAGAAACACCCAAGAGTTACTTAAGTGCTGTGGGTGAGCAAGAGCAAT
Mus musculus genome assembly, chromosome: 14.
OW971704.1:16254254-16254273
GGAAACCTTTCCATTATAGGCATCCACACA16254254TTGAGAAACACCCAAGAGTTACTTAAGTGCTGTGGGTGAGCAAGAGCAAT
Mus musculus genome assembly, chromosome: 14.
OW971733.1:15962294-15962313
GGAAACCTTTCCATTATAGGCATCCACACA15962294TTGAGAAACACCCAAGAGTTACTTAAGTGCTGTGGGTGAGCAAGAGCAAT
Mus musculus genome assembly, chromosome: 14.
OW971755.1:17040808-17040827
GGAAACCTTTCCATTATAGGCATCCACACA17040808TTGAGAAACACCCAAGAGTTACTTAAGTGCTGTGGGTGAGCAAGAGCAAT
Mus musculus musculus genome assembly, chromosome: 14.
OW971776.1:4580668-4580687
GGAAACCTTTCCATTATAGGCATCCACACA4580668TTGAGAAACACCCAAGAGTTACTTAAGTGCTGTGGGTGAGCAAGAGCAAT
Mus musculus genome assembly, chromosome: 14.
OW971796.1:16436382-16436401
GGAAACCTTTCCATTATAGGCATCCACACA16436382TTGAGAAACACCCAAGAGTTACTTAAGTGCTGTGGGTGAGCAAGAGCAAT
Mus musculus genome assembly, chromosome: 14.
OW971815.1:20720469-20720488
GGAAACCTTTCCATTATAGGCATCCACACA20720469TTGAGAAACACCCAAGAGTTACTTAAGTGCTGTGGGTGAGCAAGAGCAAT
Mus musculus castaneus genome assembly, chromosome: 14.
OW971830.1:16303501-16303520
GGAAACCTTTCCATTATAGTTATCCACACA16303501TTGAGAAACACCCAAGAGTTACTTAAGTGCTGTGGGTGAGCAAGAGCAAT
Mus musculus genome assembly, chromosome: 14.
OW971849.1:16200564-16200583
GGAAACCTTTCCATTATAGGCATCCACACA16200564TTGAGAAACACCCAAGAGTTACTTAAGTGCTGTGGGTGAGCAAGAGCAAT
Mus musculus genome assembly, chromosome: 14.
OX389808.1:22225842-22225861
GGAAACCTTTCCATTATAGGCATCCACACA22225842TTGAGAAACACCCAAGAGTTACTTAAGTGCTGTGGGTGAGCAAGAGCAAT
Mus musculus genome assembly, chromosome: 14.
OX390153.1:28001971-28001990
GGAAACCTTTCCATTATAGGCATCCACACA28001971TTGAGAAACACCCAAGAGTTACTTAAGTGCTGTGGGTGAGCAAGAGCAAT
Mus musculus genome assembly, chromosome: 14.
OX439028.1:19898344-19898363
GGAAACCTTTCCATTATAGGCATCCACACA19898344TTGAGAAACACCCAAGAGTTACTTAAGTGCTGTGGGTGAGCAAGAGCAAT
Chanos chanos genome assembly, chromosome: 8.
LR697113.1:45760029-45760048
GTGTGGTTGTCTGCAGTTACCTCCACGGCT45760029TTGAGAAACACCCAAGAGTTCAGAAAGCGGGGAGTGGACCGCTGGCACGG
Malus x robusta genome assembly, chromosome: 5.
OY720329.1:32273674-32273693
AACCCTTCTGCCTCCTTGGGCACAAATGAC32273674TTGAGAAACACCCAAGAGTTGGTGCTGGGGTTGTAGATTTTAGCTGAGTA
Pyrus communis genome assembly, chromosome: 8.
OY757075.1:21033387-21033406
CACTCTTCTGCCTCCTTAGGCACAAATGAC21033387TTGAGAAACACCCAAGAGTTGGTGCTGGGGTTGTAATTTTCAGCTGAGTA
Pyrus communis genome assembly, chromosome: 8.
OY757075.1:21057164-21057183
AACCCTTCTGCCTCCTTGGGCACAAATGAC21057164TTGAGAAACACCCAAGAGTTGGTGCTGGGGTTGTAGATTTCAGCTGAGTA
Brachypterus glaber genome assembly, chromosome: 2.
OY294045.1:42956810-42956829
CGGCGCTCGGGTTTCTACGGACTTTTAAAC42956810TTGAGAAACACCCAAGAGTTCCCGTTTTCTGGACCCTAGGCTTGACTTAC

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/AACTCTTGGGTGTTTCTCAA
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : AACTCTTGGGTGTTTCTCAA | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.165 | 0.157 | search_plus_done; http://172.18.8.135:50400/match?q=AACTCTTGGGTGTTTCTCAA&k=0&no_gap=0&offset=0&limit=50
0.289 | 0.124 | search_minus_done; http://172.18.8.135:50400/match?q=TTGAGAAACACCCAAGAGTT&k=0&no_gap=0&offset=0&limit=34
0.305 | 0.015 | cgi_end;

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