GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-04 08:44:42, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Caprimulgus europaeus genome assembly, chromosome: 6.
OU015529.1:10765052-10765074
CCTTCTCTAAGGATTTCATGGAACAGCACA10765052AACTGGAGGGAGCTAAGGAAATGACTGGCACAAAGAAATAAAGGGCACAAGGA
Pyrus pyrifolia cultivar Housui mRNA, clone: TsuENH031_07495m, 5' end sequence.
AB450711.1:161-183
CTCTCTCTCTCTCTCTCTCTCTCTTAGTGG161AACTGGAGGGAGCTAAGGAAATGAAGTGTGTATGAAGGAAAAGTTTTGGTTAA
Pyrus pyrifolia cultivar Housui mRNA, clone: TsuENH032_07495m, 5' end sequence.
AB450712.1:161-183
CTCTCTCTCTCTCTCTCTCTCTCTTAGTGG161AACTGGAGGGAGCTAAGGAAATGAAGTGTGTATGAAGGAAAAGTTTTGGTTAA
010723ABBB001116HT (ABBB) Pacific Rose spur buds from OFF trees Malus domestica cDNA clone ABBB001116, mRNA sequence.
EB142313.1:100-122
CTCTCTCTCTCTCTCTCTCTCGCTTAGTGG100AACTGGAGGGAGCTAAGGAAATGAAGTGTGTACGAAGGAAAAGCTTTGGTTAA
010723ABBB001368HT (ABBB) Pacific Rose spur buds from OFF trees Malus domestica cDNA clone ABBB001368, mRNA sequence.
EB142385.1:100-122
CTCTCTCTCTCTCTCTCTCTCGCTTAGTGG100AACTGGAGGGAGCTAAGGAAATGAAGTGTGTACGAAGGAAAAGCTTTGGTTAA
Malus x domestica DOF domain class transcription factor (DOF11) mRNA, complete cds.
HM122542.1:99-121
CTCTCTCTCTCTCTCTCTCTCGCTTAGTGG99AACTGGAGGGAGCTAAGGAAATGAAGTGTGTACGAAGGAAAAGCTTTGGTTAA
Malus hybrid cultivar cultivar Flame chromosome 14.
CP141923.1:5198647-5198669
CTCTCTCTCTCTCTCTCTCTCGCTTAGTGG5198647AACTGGAGGGAGCTAAGGAAATGAAGTGTGTACGAAGGAAAAGCTTTGGTTAA
Malus hybrid cultivar cultivar Flame chromosome 14.
CP141940.1:5529007-5529029
CTCTCTCTCTCTCTCTCTCTCGCTTAGTGG5529007AACTGGAGGGAGCTAAGGAAATGAAGTGTGTACGAAGGAAAAGCTTTGGTTAA
Malus hybrid cultivar cultivar Royalty chromosome 14.
CP141966.1:5123219-5123241
CTCTCTCTCTCTCTCTCTCTCGCTTAGTGG5123219AACTGGAGGGAGCTAAGGAAATGAAGTGTGTACGAAGGAAAAGCTTTGGTTAA
Malus hybrid cultivar cultivar Royalty chromosome 14.
CP141983.1:5498007-5498029
CTCTCTCTCTCTCTCTCTCTCGCTTAGTGG5498007AACTGGAGGGAGCTAAGGAAATGAAGTGTGTACGAAGGAAAAGCTTTGGTTAA
Malus x robusta genome assembly, chromosome: 15.
OY720339.1:5215179-5215201
CTCTCTCTCTCTCTCTCTCTCGCTTAGTGG5215179AACTGGAGGGAGCTAAGGAAATGAAGTGTGTACGAAGGAAAAGCTTTGGTTAA
Crataegus laevigata genome assembly, chromosome: 16.
OY756953.1:5383874-5383896
CTCTCTCTCTCTCTCTCTCTTGCTTAGTGG5383874AACTGGAGGGAGCTAAGGAAATGAAGTGTGTATGAAGGAAAATCTTTGGTTAA
Phalacrocorax aristotelis genome assembly, chromosome: 12.
OX451235.1:13016004-13016026
TCCTTGCACCCTTTATTTGCTTCCATCAGT13016004CATTTCCTTAGCTCCCTCCAGTTTGTGCTGTTCCATGAAATCCTTAGAGAAGG
Malus hybrid cultivar cultivar SH6 chromosome 14.
CP143371.1:26435202-26435224
TTAACCAAAGCTTTTCCTTCGTACACACTT26435202CATTTCCTTAGCTCCCTCCAGTTCCACTAAGCGAGAGAGAGAGAGAGAGAGAG
Malus hybrid cultivar cultivar SH6 chromosome 14.
CP143388.1:23223836-23223858
TTAACCAAAGCTTTTCCTTCATACACACTT23223836CATTTCCTTAGCTCCCTCCAGTTCCACTAAGCGAGAGAGAGAGAGAGAGAGAG
Malus sylvestris genome assembly, chromosome: 14.
OU696516.1:25141144-25141166
TTAACCAAAGCTTTTCCTTCGTACACACTT25141144CATTTCCTTAGCTCCCTCCAGTTCCACTAAGCGAGAGAGAGAGAGAGAGAGAG
Malus domestica genome assembly, chromosome: 14.
OU696690.1:26323400-26323422
TTAACCAAAGCTTTTCCTTCGTACACACTT26323400CATTTCCTTAGCTCCCTCCAGTTCCACTAAGCGAGAGAGAGAGAGAGAGAGAG
Malus domestica genome assembly, chromosome: 14.
OU744555.1:27056681-27056703
TTAACCAAAGCTTTTCCTTCGTACACACTT27056681CATTTCCTTAGCTCCCTCCAGTTCCACTAAGCGAGAGAGAGAGAGAGAGAGAG
Malus domestica genome assembly, chromosome: 14.
OU744966.1:26964458-26964480
TTAACCAAAGCTTTTCCTTCGTACACACTT26964458CATTTCCTTAGCTCCCTCCAGTTCCACTAAGCGAGAGAGAAAGAGAGAGAGAG
Malus domestica genome assembly, chromosome: 14.
OU745004.1:26869013-26869035
TTAACCAAAGCTTTTCCTTCGTACACACTT26869013CATTTCCTTAGCTCCCTCCAGTTCCACTAAGCGAGAGAGAGAGAGAGAGAGAG
Pyrus communis genome assembly, chromosome: 13.
OY757080.1:21884534-21884556
TTAACCAAAATTTTTCCTTCATACACACTT21884534CATTTCCTTAGCTCCCTCCAGTTCCACTAAGCGAGAGAGAGAGAGATAGAGAG

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/AACTGGAGGGAGCTAAGGAAATG
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : AACTGGAGGGAGCTAAGGAAATG | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.333 | 0.324 | search_plus_done; http://172.18.8.135:50400/match?q=AACTGGAGGGAGCTAAGGAAATG&k=0&no_gap=0&offset=0&limit=50
0.366 | 0.033 | search_minus_done; http://172.18.8.135:50400/match?q=CATTTCCTTAGCTCCCTCCAGTT&k=0&no_gap=0&offset=0&limit=38
0.371 | 0.006 | cgi_end;

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