GGGenome Help | English

データベース:

ミスマッチ/ギャップを許容 ミスマッチのみ許容 : 塩基まで (検索する配列長の25%まで)
双方向を検索 +方向のみ検索 -方向のみ検索

2025-04-06 08:22:56, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます(ミスマッチ挿入欠失

T113542e KV2 Medicago truncatula cDNA clone pKV2-2H1, mRNA sequence.
AW191261.1:137-159
GCAAATTGTGGATCAGATTCCTGGAAGAGC137AACTGGTGCCTATAGTCATAGTCAGGGTATTCACGGTTTACGCGATACAATAG
NF054H04ST1F1000 Developing stem Medicago truncatula cDNA clone NF054H04ST 5', mRNA sequence.
AW692367.2:578-600
GCAAATTGTGGATCAGATTCCTGGAAGAGC578AACTGGTGCCTATAGTCATAGTCAGGGTATTCAAGGGTTTACGTGA
EST391615 GVN Medicago truncatula cDNA clone pGVN-30L14, mRNA sequence.
AW980462.1:428-450
GCAAATTGTGGATCAGATTCCTGGAAGAGC428AACTGGTGCCTATAGTCATAGTCAGGGTATTCAGGGTTTACGTGATACAATAG
EST396620 KV0 Medicago truncatula cDNA clone pKV0-13F3, mRNA sequence.
BE203944.1:291-313
GCAAATTGTGGATCAGATTCCTGGAAGAGC291AACTGGTGCCTATAGTCATAGTCAGGGTATTCAGGGTTTACGTGATACAATAG
EST396888 KV0 Medicago truncatula cDNA clone pKV0-14H12, mRNA sequence.
BE204212.1:445-467
GCAAATTGTGGATCAGATTCCTGGAAGAGC445AACTGGTGCCTATAGTCATAGTCAGGGTATTCAGGGTTTACGTGATACAATAG
EST396889 KV0 Medicago truncatula cDNA clone pKV0-14H14, mRNA sequence.
BE204213.1:401-423
GCAAATTGTGGATCAGATTCCTGGAAGAGC401AACTGGTGCCTATAGTCATAGTCAGGGTATTCAGGGTTTACGTGATACAATAG
NF045H09EC1F1079 Elicited cell culture Medicago truncatula cDNA clone NF045H09EC 5', mRNA sequence.
BF648433.1:426-448
GCAAATTGTGGATCAGATTCCTGGAAGAGC426AACTGGTGCCTATAGTCATAGTCAGGGTATTCAGGGTTTACGTGATACAATAG
NF118B01ST1F1011 Developing stem Medicago truncatula cDNA clone NF118B01ST 5', mRNA sequence.
BG447604.1:240-262
GCAAATTGTGGATCAGATTCCTGGAAGAGC240AACTGGTGCCTATAGTCATAGTCAGGGTATTCAGGGTTTACGTGATACAATAG
NF034H05ST1F1000 Developing stem Medicago truncatula cDNA clone NF034H05ST 5', mRNA sequence.
BG447630.1:496-518
GCAAATTGTGGATCAGATTCCTGGAAGAGC496AACTGGTGCCTATAGTCATAGTCAGGGTATTCAGGGTTTACGTGATACAATAG
NF095G02LF1F1017 Developing leaf Medicago truncatula cDNA clone NF095G02LF 5', mRNA sequence.
BG453886.1:417-439
GCAAATTGTGGATCAGATTCCTGGAAGAGC417AACTGGTGCCTATAGTCATAGTCAGGGTATTCAGGGTTTACGTGATACAATAG
EST507852 KV3 Medicago truncatula cDNA clone pKV3-48J16 5' end, mRNA sequence.
BG646233.1:496-518
GCAAATTGTGGATCAGATTCCTGGAAGAGC496AACTGGTGCCTATAGTCATAGTCAGGGTATTCAGGGTTTACGTGATACAATAG
NF089F10IN1F1091 Insect herbivory Medicago truncatula cDNA clone NF089F10IN 5', mRNA sequence.
BI265855.1:431-453
GCAAATTGTGGATCAGATTCCTGGAAGAGC431AACTGGTGCCTATAGTCATAGTCAGGGTATTCAGGGTTTACGTGATACAATAG
NF103A12IN1F1097 Insect herbivory Medicago truncatula cDNA clone NF103A12IN 5', mRNA sequence.
BI266325.1:398-420
GCAAATTGTGGATCAGATTCCTGGAAGAGC398AACTGGTGCCTATAGTCATAGTCAGGGTATTCAGGGTTTACGTGATACAATAG
NF101B09IN1F1077 Insect herbivory Medicago truncatula cDNA clone NF101B09IN 5', mRNA sequence.
BI267295.1:432-454
GCAAATTGTGGATCAGATTCCTGGAAGAGC432AACTGGTGCCTATAGTCATAGTCAGGGTATTCAGGGTTTACGTGATACAATAG
NF012A09NR1F1000 Nodulated root Medicago truncatula cDNA clone NF012A09NR 5', mRNA sequence.
BQ137464.1:276-298
GCAAATTGTGGATCAGATTCCTGGAAGAGC276AACTGGTGCCTATAGTCATAGTCAGGGTATTCAGGGTTTACGTGATACAATAG
EST647420 HOGA Medicago truncatula cDNA clone HOGA-31H14, mRNA sequence.
CB894628.1:231-253
GCAAATTGTGGATCAGATTCCTGGAAGAGC231AACTGGTGCCTATAGTCATAGTCAGGGTATTCAGGGTTTACGTGATACAATAG
EST647707 HOGA Medicago truncatula cDNA clone HOGA-32L20, mRNA sequence.
CB894915.1:346-368
GCAAATTGTGGATCAGATTCCTGGAAGAGC346AACTGGTGCCTATAGTCATAGTCAGGGTATTCAGGGTTTACGTGATACAATAG
s13dSG71G0700052_156602 Glandular trichomes Medicago sativa cDNA, mRNA sequence.
CO513970.1:444-466
GCAAATTGTGGATCAGATCCCTGGAAGAGC444AACTGGTGCCTATAGTCATAGTCAGGGTATTCA
s13dNF54B02AT025_517144 Aphid-Infected Shoots Medicago truncatula cDNA, mRNA sequence.
CX528316.1:407-429
GCAAATTGTGGATCAGATTCCTGGAAGAGC407AACTGGTGCCTATAGTCATAGTCAGGGTATTCAGGGTTTACGTGATACAATAG
s13dNF51D12MJ095_245696 Methyl Jasmonate-Elicited Root Cell Suspension Culture Medicago truncatula cDNA, mRNA sequence.
CX529826.1:420-442
GCAAATTGTGGATCAGATTCCTGGAAGAGC420AACTGGTGCCTATAGTCATAGTCAGGGTATTCAGGGTTTACGTGATACAATAG
s13dNF80D09MJ074_257247 Methyl Jasmonate-Elicited Root Cell Suspension Culture Medicago truncatula cDNA, mRNA sequence.
CX531651.1:400-422
GCAAATTGTGGATCAGATTCCTGGAAGAGC400AACTGGTGCCTATAGTCATAGTCAGGGTATTCAGGGTTTACGTGATACAATAG
s13dNF0CA01MJ001_319387 Methyl Jasmonate-Elicited Root Cell Suspension Culture Medicago truncatula cDNA, mRNA sequence.
CX533111.1:416-438
GCAAATTGTGGATCAGATTCCTGGAAGAGC416AACTGGTGCCTATAGTCATAGTCAGGGTATTCAGGGTTTACGTGATACAATAG
s13dNF0KB03MJ025_320454 Methyl Jasmonate-Elicited Root Cell Suspension Culture Medicago truncatula cDNA, mRNA sequence.
CX533651.1:426-448
GCAAATTGTGGATCAGATTCCTGGAAGAGC426AACTGGTGCCTATAGTCATAGTCAGGGTATTCAGGGTTTACGTGATACAATAG
s13dNF0KB03MJ025_322381 Methyl Jasmonate-Elicited Root Cell Suspension Culture Medicago truncatula cDNA, mRNA sequence.
CX534312.1:426-448
GCAAATTGTGGATCAGATTCCTGGAAGAGC426AACTGGTGCCTATAGTCATAGTCAGGGTATTCAGGGTTTACGTGATACAATAG
AC3930 NOLLY Medicago truncatula cDNA 5', mRNA sequence.
DY617760.1:4-26
AGC4AACTGGTGCCTATAGTCATAGTCAGGGTATTCAGGGTTTACGTGATACAATAG
MTYEX93TF JCVI-MT1 Medicago truncatula cDNA 5', mRNA sequence.
EV262621.1:533-555
GCAACTTGTGGATCAGATTCCTGGAAGAGC533AACTGGTGCCTATAGTCATAGTCAGGGTATTCAGGGTTTACGTGATACAATAG
Aeschynomene indica mRNA 5-prime sequence from clone ADL0AAA6YC14 (ADL0AAA6YC14CM1).
FO991580.1:32-54
GGATGTTATTGATATGATTCCTGGGGGAGC32AACTGGTGCCTATAGTCATAGTCAGGGTATTAAGGGCCTCCGTGATATAATAG
Glycyrrhiza uralensis cDNA, clone: kanzou010CA08.f1, 5'-end sequence.
FS270763.1:370-392
GCAGATTGTGGATCAGATTCCTGGGAGAGC370AACTGGTGCCTATAGTCATAGTCAGGGTATTAAGGGTTTGCGTGATACAATAG
Glycyrrhiza uralensis mRNA, clone: EPP006KIAA21S003504, 5'-end sequence.
FS991526.1:122-144
GCAGATTGTGGATCAGATTCCTGGGAGAGC122AACTGGTGCCTATAGTCATAGTCAGGGTATTAAGGGTTTGCGTGATACAATAG
Trifolium repens mRNA, clone: WCC37c04, unspecified EST.
FY467057.1:319-341
GCAGATTGTGGATCAGATTCCTGGGAGAGC319AACTGGTGCCTATAGTCATAGTCAGGGTATTCAGGGTTTACGTGAAACAATAG
MEUAO42TF JCVI-MT2 Medicago truncatula cDNA 5', mRNA sequence.
GE345454.1:381-403
GCAAATTGTGGATCAGATTCCTGGAAGAGC381AACTGGTGCCTATAGTCATAGTCAGGGTATTCAGGGTTTACGTGATACAATAG
METBU68TF JCVI-MT3 Medicago truncatula cDNA 5', mRNA sequence.
GT137079.1:440-462
GCAAATTGTGGATCAGATTCCTGGAAGAGC440AACTGGTGCCTATAGTCATAGTCAGGGTATTCAGGGTTTACGTGATACAATAG
TSA: Medicago sativa cultivar Chilean F0D_910 mRNA sequence.
JL867365.1:256-278
GCAAATTGTGGATCAGATCCCTGGAAGAGC256AACTGGTGCCTATAGTCATAGTCAGGGTATTCAGGGTTTACGTGATGCAATAG
TSA: Medicago sativa subsp. falcata cultivar Wisfal FZ0_9453 mRNA sequence.
JL890630.1:493-515
GCAAATTGTGGATCAGATCCCTGGAAGAGC493AACTGGTGCCTATAGTCATAGTCAGGGTATTCAGGGTTTACGTGATGCAATAG
Medicago truncatula clone mth2-30n15, complete sequence.
AC151666.15:49614-49636
GCAAATTGTGGATCAGATTCCTGGAAGAGC49614AACTGGTGCCTATAGTCATAGTCAGGTATTGATTTGGTTATCTAATTTGGTTT
Medicago truncatula chromosome 8 clone mth2-50p19, complete sequence.
AC157534.12:49614-49636
GCAAATTGTGGATCAGATTCCTGGAAGAGC49614AACTGGTGCCTATAGTCATAGTCAGGTATTGATTTGGTTATCTAATTTGGTTT
Medicago truncatula clone mth2-58c24, complete sequence.
AC225502.9:63189-63211
GCAAATTGTGGATCAGATTCCTGGAAGAGC63189AACTGGTGCCTATAGTCATAGTCAGGTATTGATTTGGTTATCTAATTTGGTTT
Medicago truncatula clone MTYFL_FM_FN_FO1G-O-18 unknown mRNA.
BT053200.1:533-555
GCAACTTGTGGATCAGATTCCTGGAAGAGC533AACTGGTGCCTATAGTCATAGTCAGGGTATTCAGGGTTTACGTGATACAATAG
Medicago truncatula clone JCVI-FLMt-12J19 unknown mRNA.
BT140109.1:533-555
GCAACTTGTGGATCAGATTCCTGGAAGAGC533AACTGGTGCCTATAGTCATAGTCAGGGTATTCAGGGTTTACGTGATACAATAG
Arachis hypogaea cultivar Shitouqi chromosome B02.
CP030994.1:86868678-86868700
GAATATTATTGATATGATTCCTGGGCAAGC86868678AACTGGTGCCTATAGTCATAGTCAGGTACTACCCGATTTATCGACGTTGTATT
Arachis hypogaea cultivar Shitouqi chromosome B08.
CP031000.1:69545388-69545410
GAATATTATTGATATAATTCCTCGGCAAGC69545388AACTGGTGCCTATAGTCATAGTCAGGTACTACCTGATTTATCGAAGTTGTATT
Arachis ipaensis cultivar K30076 chromosome 02.
CP049893.1:85997515-85997537
GAATATTATTGATATGATTCCTGGGCAAGC85997515AACTGGTGCCTATAGTCATAGTCAGGTACTACCCGATTTATCGACGTTGTATT
Arachis ipaensis cultivar K30076 chromosome 08.
CP049899.1:61362382-61362404
GAATATTATTGATATAATTCCTCGGCAAGC61362382AACTGGTGCCTATAGTCATAGTCAGGTACTACCTGATTTATCGAAGTTGTATT
Medicago lupulina genome assembly, chromosome: 5.
OY283143.1:60201719-60201741
GCAAATTGTGGATCAGATCCCTGGAAGAGC60201719AACTGGTGCCTATAGTCATAGTCAGGTATTGATTGGGTTATCTAATTTGGTTT
Astragalus glycyphyllos genome assembly, chromosome: 1.
OY754307.1:115403859-115403881
GCAGATTGTGGAGCAGATTCCTGGAAGAGC115403859AACTGGTGCCTATAGTCATAGTCAGGTATTATTCGGTTATCTAATTTAAGTTA
Lathyrus sativus genome assembly, chromosome: 4.
OZ012738.1:23896746-23896768
GCAGATTGTGGATCAGATTCCTGGGAGAGC23896746AACTGGTGCCTATAGTCATAGTCAGGTATTGATGGGGTTATCTAATTTGGTTT
Arachis hypogaea cultivar Shitouqi chromosome B05.
CP030997.1:38203373-38203395
GATACAACTTTGATAAATCGGGTAGTACCT38203373GACTATGACTATAGGCACCAGTTGCTTACCCAGGAATCATATCAATAATATTC
Arachis ipaensis cultivar K30076 chromosome 05.
CP049896.1:44727959-44727981
GATACAACTTTGATAAATCGGGTAGTACCT44727959GACTATGACTATAGGCACCAGTTGCTTACCCAGGAATCATATCAATAATATTC
Trifolium repens isolate ACLI19 chromosome 08_0cc.
CP125850.1:6307330-6307352
AAACGAAATTGGATAAGCCAATCAATACCT6307330GACTATGACTATAGGCACCAGTTGCTCTCCCAGGAATCTGATCCACAATCTGC
Trifolium repens isolate ACLI19 chromosome 08_Pall.
CP125851.1:6453716-6453738
AAACCAAATTGGATAACCCAATCAATACCT6453716GACTATGACTATAGGCACCAGTTGCTCTCCCAGGAATCTGATCCACAATCTGC
Trifolium dubium genome assembly, chromosome: 2.
OX638063.1:5015880-5015902
ATAAACAAACTTAGAGCCCAATCAATACCT5015880GACTATGACTATAGGCACCAGTTGCTCTCCCAGGAATCTGATCCACAATCTGC
Trifolium fragiferum genome assembly, chromosome: 4.
OX940792.1:8145209-8145231
GATAATAATCAAATAAACCAATCAATACCT8145209GACTATGACTATAGGCACCAGTTGCTCTCCCAGGAATCTGATCCACAATCTGC

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/AACTGGTGCCTATAGTCATAGTC
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : AACTGGTGCCTATAGTCATAGTC | format : html | download : | debug :

0.008 | 0.008 | search_start;
1.381 | 1.373 | search_plus_done; http://172.18.8.135:50400/match?q=AACTGGTGCCTATAGTCATAGTC&k=0&no_gap=0&offset=0&limit=50
1.510 | 0.129 | search_minus_done; http://172.18.8.135:50400/match?q=GACTATGACTATAGGCACCAGTT&k=0&no_gap=0&offset=0&limit=4
1.514 | 0.004 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).