GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-04 23:23:09, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Mdfw2013c15.y1 Mdfw Malus domestica cDNA clone Mdfw2013c15 5' similar to TR:Q41536 Q41536, mRNA sequence.
CN492180.1:1-25
1AACTTGTCTAGGAATCAATTGACTGGAAAGATCCCTTCCAAGATCGGAAACTTGC
Malus hybrid cultivar cultivar Flame chromosome 5.
CP141914.1:10525722-10525746
ATAAGTAGCCTCATTCTATTGGGTACCTTG10525722AACTTGTCTAGGAATCAATTGACTGGAAAGATCTCTTCCAAGATCGGAAACTTGC
Malus hybrid cultivar cultivar Flame chromosome 5.
CP141914.1:10634986-10635010
ATAAGTAGCCTCATTCCATTGGGTACCTTG10634986AACTTGTCTAGGAATCAATTGACTGGAAAGATCCCTTCCAAGATCGGAAACTTGC
Malus hybrid cultivar cultivar Flame chromosome 5.
CP141931.1:11012750-11012774
ATAAGTAGCCTCATTCTATTGGGTACCTTG11012750AACTTGTCTAGGAATCAATTGACTGGAAAGATCCCTTCCAAGATCGGAAACTTGC
Malus hybrid cultivar cultivar Royalty chromosome 5.
CP141957.1:10488826-10488850
ATAAGTAGCCTTATTCTATTGGGTACCTTG10488826AACTTGTCTAGGAATCAATTGACTGGAAAGATCCCTTCCAAGATCGGAAACTTGC
Malus hybrid cultivar cultivar Royalty chromosome 5.
CP141957.1:10532937-10532961
ATAAGTAGCCTCATTCTATTGGGTACCTTG10532937AACTTGTCTAGGAATCAATTGACTGGAAATATCCCTTCCAAGATCGGAAACTTGC
Malus hybrid cultivar cultivar Royalty chromosome 5.
CP141974.1:11288271-11288295
ATAAGTAGCCTCATTCTATTGGGTACCTTG11288271AACTTGTCTAGGAATCAATTGACTGGAAAGATCCCTTCCAAGATCGGAAACTTGC
Malus hybrid cultivar cultivar Royalty chromosome 5.
CP141974.1:11349733-11349757
ATAAGTAGCCTCATTCTATTGGGTACCTTG11349733AACTTGTCTAGGAATCAATTGACTGGAAATATCCCTTCCAAGATCGGAAACTTGC
Crataegus laevigata genome assembly, chromosome: 2.
OY756939.1:11801242-11801266
ATAAGCAGCCTCATTCTATTGGGTACCTTG11801242AACTTGTCTAGGAATCAATTGACTGGAAAGATCCCTTCCAAGATCGGAAACTTGC
Pyrus communis genome assembly, chromosome: 2.
OY757069.1:8630566-8630590
ATAATTAGCCTCATTCTATTGGGTACCTTG8630566AACTTGTCTAGGAATCAATTGACTGGAAAGATCCCTTCCAAGATCGGAAACTTGC
Pyrus communis genome assembly, chromosome: 2.
OY757069.1:8647784-8647808
ATAAGTAGCCTCATTCTATTGGGTACCTTG8647784AACTTGTCTAGGAATCAATTGACTGGAAAGATCCCTTCCCAGATTGGAAACTTGC
Malus hybrid cultivar cultivar SH6 chromosome 5.
CP143379.1:33026388-33026412
GCAAGTTTCCGATCTTGGAAGGGATCTTTC33026388CAGTCAATTGATTCCTAGACAAGTTCAAGGTACCCAATTGAATAAGGCTACTTAT
Malus sylvestris genome assembly, chromosome: 5.
OU696507.1:35949334-35949358
GCAAGTTTCCGATTTTGGAAGGGATATTTC35949334CAGTCAATTGATTCCTAGACAAGTTCAAGGTACCCAATAGAATGAGGCTACTTAT
Malus domestica genome assembly, chromosome: 5.
OU744546.1:35052298-35052322
GCAAGTTTCCGATTTTGGAAGGGATATTTC35052298CAGTCAATTGATTCCTAGACAAGTTCAAGGTACCCAATAGAATGAGGCTACTTAT
Malus domestica genome assembly, chromosome: 5.
OU744546.1:35098137-35098161
GCAAGTTTCCGATTTTGGAAGGGATATTTC35098137CAGTCAATTGATTCCTAGACAAGTTCAAGGTACCCAATAGAATGAGGCTACTTAT
Malus domestica genome assembly, chromosome: 5.
OU744995.1:36390857-36390881
GCAAGTTTCCGATCTTGGAAGGGATCTTTC36390857CAGTCAATTGATTCCTAGACAAGTTCAAGGTACCCAATAGAATGAGGCTACTTAT
Pyrus communis genome assembly, chromosome: 2.
OY757069.1:7059092-7059116
GCAAGTTTCCGATCTCGGAAGGGATCTTTC7059092CAGTCAATTGATTCCTAGACAAGTTCAAGGTACCCAATAGAATGAGGCTACTTAT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/AACTTGTCTAGGAATCAATTGACTG
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : AACTTGTCTAGGAATCAATTGACTG | format : html | download : | debug : 

0.008 | 0.008 | search_start;
0.135 | 0.127 | search_plus_done; http://172.18.8.135:50400/match?q=AACTTGTCTAGGAATCAATTGACTG&k=0&no_gap=0&offset=0&limit=50
0.159 | 0.024 | search_minus_done; http://172.18.8.135:50400/match?q=CAGTCAATTGATTCCTAGACAAGTT&k=0&no_gap=0&offset=0&limit=39
0.163 | 0.004 | cgi_end;

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