GGGenome Help | English

データベース：
 

ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-03 12:07:39, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Brassica napus cultivar Xiang5A chromosome 8.
CP123883.1:5888762-5888782
AGTAAAACTTTAATAATGAGAATATTACCA5888762AAGACTATCATATTACCGAGCGTCAATGATCGACATGGTGATTTGGTTCAC
Sequence 4 from patent US 5484905.
I17186.1:2560-2580
GTGAACCAAATCACCATGTCGATCATTGAC2560GCTCGGTAATATGATAGTCTTTGATAATATTCTCACTATTAAAGTTTTACT
KBrH119J13 genomic clone, KBrH (HindIII) BAC library Brassica rapa subsp. pekinensis.
CT011938.1:305-325
GTGAACCAAATCACCATGTCGATCATTGAC305GCTCGGTAATATGATAGTCTTTGATAATATTCTCATTATTAAAGTTTTACT
KBrH119J13 genomic clone, KBrH (HindIII) BAC library Brassica rapa subsp. pekinensis.
CT012054.1:358-378
GTGAACCAAATCACCATGTCGATCATTGAC358GCTCGGTAATATGATAGTCTTTGATAATATTCTCATTATTAAAGTTTTACT
Brassica rapa mRNA for SRK29, complete cds.
AB008191.1:2573-2593
GTGAACCAAATCACCATGTCGATCATTGAC2573GCTCGGTAATATGATAGTCTTTGGTAATATTCTCATTATTAAAGTTTTACT
Brassica oleracea SRK2-b mRNA, complete cds.
AB024416.1:2557-2577
GTGAACCAAATCACCATGTCGATCATTGAC2557GCTCGGTAATATGATAGTCTTTGATAATATTCTCATTATTAAAGTTTTTGT
Brassica rapa SRK-60, SLG-60 genes for S receptor kinase, S-locus glycoprotein, partial cds.
AB097116.1:30816-30836
GTGAACCAAATCACCATGTCGATCATTGAC30816GCTCGGTAATATGATAGTCTTTGATAATATTCTCATTATTAAAGTTTTACT
Brassica oleracea S-15 SRK gene for S-locus receptor kinase, complete cds.
AB180903.1:17358-17378
GTGAACCAAATCACCATGTCGATCATTGAC17358GCTCGGTAATATGATAGTCTTTGATAATATTCTCATTATTAAAGTTTTACT
Brassica rapa SRK40 mRNA for S-receptor kinase, complete cds.
AB211197.1:2560-2580
GTGAACCAAATCACCATGTCGATCATTGAC2560GCTCGGTAATATGATAGTCTTTGATAATATTCTCATTACTAAAGTTTTACT
Brassica napus BnSRK-6 gene for S receptor kinase, complete cds.
AB270772.1:8782-8802
GTGAACCAAATCACCATGTCGATCATTGAC8782GCTCGGTAATATGATAGTCTTTGATAATATTCTCATTATTAAAGTTTTACT
Brassica napus cultivar Xiang5A chromosome 12.
CP123887.1:47278912-47278932
GTGAACCAAATCACCATGTCGATCATTGAC47278912GCTCGGTAATATGATAGTCTTTGATAATATTCTCATTATTAAAGTTTTACT
Brassica napus genome assembly, chromosome: C06.
HG994370.1:41274927-41274947
GTGAACCAAATCACCATGTCGATCATTGAC41274927GCTCGGTAATATGATAGTCTTTGATAATATTCTCATTATTAAAGTTTTACT
Brassica oleracea var. italica haplotype BOI1 SRK protein gene, partial cds.
JQ253785.1:1023-1043
GTGAACCAAATCACCATGTCGATCATTGAC1023GCTCGGTAATATGATAGTCTT
Brassica rapa genome, scaffold: A07.
LR031574.1:22491528-22491548
GTGAACCAAATCACCATGTCGATCATTGAC22491528GCTCGGTAATATGATAGTCTTTGATAATATTCTCATTATTAAAGTTTTACT
Brassica rapa genome assembly, chromosome: A07.
LS974623.2:22782668-22782688
GTGAACCAAATCACCATGTCGATCATTGAC22782668GCTCGGTAATATGATAGTCTTTGATAATATTCTCATTATTAAAGTTTTACT
Brassica oleracea mRNA for SRK5 protein, partial.
Y18259.1:2540-2560
GTGAACCAAATCACCATGTCGATCATTGAC2540GCTCGGTAATATGATCGTCTTTGATAATATTCTCATTATTAAAGTTTTACT
Brassica oleracea mRNA for SRK15 protein, partial.
Y18260.1:2543-2563
GTGAACCAAATCACCATGTCGATCATTGAC2543GCTCGGTAATATGATAGTCTTTGATAATATTCTCATTATTAAAGTTTTACT

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/AAGACKATCATATTACCGAGC
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : AAGACKATCATATTACCGAGC | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.112 | 0.103 | search_plus_done; http://172.18.8.135:50400/match?q=AAGACKATCATATTACCGAGC&k=0&no_gap=0&offset=0&limit=50
0.213 | 0.101 | search_minus_done; http://172.18.8.135:50400/match?q=GCTCGGTAATATGATMGTCTT&k=0&no_gap=0&offset=0&limit=49
0.224 | 0.010 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).