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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-03 15:07:38, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Aspergillus puulaauensis MK2 DNA, chromosome 2, nearly complete sequence.
AP024444.1:2772286-2772305
TTAGTGGCTAAAATTGCTGAAGCTATTTGC2772286AAGAGAAGGGGGTCGAAGAAAAGAGGCCCAATAACAATGCAACAATAGCC
Musa acuminata subsp. malaccensis isolate AA chromosome 7.
CP126376.1:33137148-33137167
CTTTAATCGGTTTGGTGGATGGATTCTGTA33137148AAGAGAAGGGGGTCGAAGAAGGGGAGAATGTCATCATAAGGTTGCGGGAA
Musa acuminata subsp. malaccensis isolate AA chromosome 18.
CP126387.1:32966600-32966619
CTTTAATCGGTTTGGTGGATGGATTCTGTA32966600AAGAGAAGGGGGTCGAAGAAGGGGAGAATGTCATCATAAGGTTGCGGGAA
Musa acuminata subsp. malaccensis strain Doubled-haploid Pahang (DH-Pahang) genome assembly, chromosome: A07.
HG996473.1:34033036-34033055
CTTTAATCGGTTTGGTGGATGGATTCTGTC34033036AAGAGAAGGGGGTCGAAGAAGGGGAGAATGTCATCATAAGGTTGCGGGAA
Musa schizocarpa genome assembly, chromosome: S07.
LS990920.1:37589260-37589279
CTTTAATCGGTTTGGTGGATGGATTCTGTA37589260AAGAGAAGGGGGTCGAAGAAGGGGAGAATGTCATCATAAGGTTGCGGGAA
Osmia bicornis bicornis genome assembly, chromosome: 6.
OU015509.1:5944577-5944596
TCGTGAAACTGACGTCACCATGCACGTCAA5944577AAGAGAAGGGGGTCGAAGAAAAGGAAGCGGAGACAAGAAGCGATAATCCG
Hololepta plana genome assembly, chromosome: X.
OY968835.1:5205473-5205492
TGGTCTTGATTATGCAGGCCCAATAATAGT5205473AAGAGAAGGGGGTCGAAGAAGTAAGAAGACGCAAAAGGCGTACATTGCTT
Hololepta plana genome assembly, chromosome: X.
OY968835.1:5302853-5302872
TGGTCTTGATTATGCAGGCCCAATAATAGT5302853AAGAGAAGGGGGTCGAAGAAGTAAGAAGACGCAAAAGGCGTACATTGCTT
TSA: Musa acuminata AAA Group Unigene13310_B1 mRNA sequence.
JV358800.1:338-357
TTCCCGCAACCTTATGATGACATTCTCCCC338TTCTTCGACCCCCTTCTCTTTACAGAATCCATCCACCAAACCGATTAAAG
TSA: Musa acuminata AAA Group Unigene18633_NK1 mRNA sequence.
JV415138.1:337-356
TTCCCGCAACCTTATGATGACATTCTCCCC337TTCTTCGACCCCCTTCTCTTTACAGAATCCATCCACCAAACCGATTAAAG
Alisma plantago-aquatica genome assembly, chromosome: 4.
OY856412.1:998458972-998458991
TGTCAAATACAAGAGAGATTCACATCTTCC998458972TTCTTCGACCCCCTTCTCTTCATCTTCCACCTAGAGACACAATGAAAATC
Lumbricus rubellus genome assembly, chromosome: 12.
OX243822.1:4375640-4375659
TTTTATGGACCCCAATACGCACAAATAATT4375640TTCTTCGACCCCCTTCTCTTTGGGACTTGCTTTCTCCTTCTATTCTCTCT
Lumbricus terrestris genome assembly, chromosome: 6.
OX457041.1:12929728-12929747
TAATTTAATCTGGAGTTCTTCAATATTCCA12929728TTCTTCGACCCCCTTCTCTTTTAAGATTCATACCGGTATTTCAATGTAAG
Andrena bicolor genome assembly, chromosome: 5.
OY482668.1:3475658-3475677
CGGTCTCGGCCCTCGCACCTTTTCGGCATC3475658TTCTTCGACCCCCTTCTCTTCTCCACCCGCTTTTATTACTTTCTTTTTTA
Hololepta plana genome assembly, chromosome: X.
OY968835.1:5595488-5595507
AAGCAATGTACGCCTTTTGCGTCTTCTTAC5595488TTCTTCGACCCCCTTCTCTTACTATTATTGGGCCTGCATAATCAAGACCA

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/AAGAGAAGGGGGTCGAAGAA
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : AAGAGAAGGGGGTCGAAGAA | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.266 | 0.258 | search_plus_done; http://172.18.8.135:50400/match?q=AAGAGAAGGGGGTCGAAGAA&k=0&no_gap=0&offset=0&limit=50
0.391 | 0.125 | search_minus_done; http://172.18.8.135:50400/match?q=TTCTTCGACCCCCTTCTCTT&k=0&no_gap=0&offset=0&limit=42
0.396 | 0.005 | cgi_end;

GGGenome by @meso_cacase at DBCLS
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