GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-07 08:37:13, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

TSA: Lens culinaris contig01474.Lecu mRNA sequence.
JI847756.1:297-321
AATTCCGAGTCATCTCAAAACCAAGAGGAG297AAGAGAGTGTGACAAAGCGAGAAATTGCAAAGTTTTGGAGGCAAAAGAGAATTGT
Trifolium dubium genome assembly, chromosome: 6.
OX638067.1:41456049-41456073
AATATCGAGTCATCTCAAAGCCAAGAGCAG41456049AAGAGAGTGTGACAAAGCGAGAAATCGCCAAGTTTTGGAGGCAAAAACGAATTGT
Trifolium dubium genome assembly, chromosome: 8.
OX638069.1:34490578-34490602
AATTTCGAGTCATCTCAAAGCCAAGAGCAG34490578AAGAGAGTGTGACAAAGCGAGAAATCGCCAAGTTTTGGAGACAAAAGCGAATTGT
Trifolium fragiferum genome assembly, chromosome: 3.
OX940791.1:56539620-56539644
AATTTCGAGTCATCTCAAAGCCAAGAGGAG56539620AAGAGAGTGTGACAAAGCGAGAAATCGCCAAGTTTTGGAGGCAAAAGCGAATTGT
Cicer arietinum chromosome Ca8.
CP039338.1:6160775-6160799
ACAATTCGCTTTTGCATCCAAAACTTGGCA6160775ATTTCTCGCTTTGTCACACTCTCTTCCGCTCTTGGCTTTGAGATGACTCGAAATT
Cicer arietinum chromosome Ca8.
CP040773.1:6160775-6160799
ACAATTCGCTTTTGCATCCAAAACTTGGCA6160775ATTTCTCGCTTTGTCACACTCTCTTCCGCTCTTGGCTTTGAGATGACTCGAAATT
Trifolium repens isolate ACLI19 chromosome 05_Pall.
CP125845.1:10634435-10634459
ACAATTCGCTTTTGCCTCCAAAACTTGGCG10634435ATTTCTCGCTTTGTCACACTCTCTTCTGCTCTTGGCTTTGAGATGACTCGAAATT
Trifolium subterraneum genome assembly, chromosome: 7.
OX637467.1:7802021-7802045
ACAATTCGCTTTTGCCTCCAAAACTTAGCG7802021ATTTCTCGCTTTGTCACACTCTCTTCAGCTCTTGGCTTTGAGATGACTCGAAATT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/AAGAGAGTGTGACAAAGCGAGAAAT
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : AAGAGAGTGTGACAAAGCGAGAAAT | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.115 | 0.106 | search_plus_done; http://172.18.8.135:50400/match?q=AAGAGAGTGTGACAAAGCGAGAAAT&k=0&no_gap=0&offset=0&limit=50
0.143 | 0.028 | search_minus_done; http://172.18.8.135:50400/match?q=ATTTCTCGCTTTGTCACACTCTCTT&k=0&no_gap=0&offset=0&limit=46
0.146 | 0.003 | cgi_end;

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