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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-03 11:39:07, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Rhinatrema bivittatum genome assembly, chromosome: 7.
LR584393.1:118065826-118065844
ACAGGCTAACCCGGGGGGGGGGGGGGAGGG118065826AAGAGGATGAAGGGAAGGTTTAGTTCAGACTATATTAGTTCAACTTTAG
Danio kyathit genome assembly, chromosome: 25.
LR812543.1:13201728-13201746
AAGGCATTCCGTGTGATCAGAAGTGAAGAA13201728AAGAGGATGAAGGGAAGGTTCTGGGCTTTGATTAAAGCTTATGAGATTA
Thunnus albacares genome assembly, chromosome: 10.
OU607601.1:33769147-33769165
ATTGGAGGGAGACAGGAAAGGAGGTAAAGG33769147AAGAGGATGAAGGGAAGGTAAGGAAAGAAGGCGAGGGAAGGAGATGAAG
Sequence 56868 from Patent WO2014036048.
JC806493.1:366-384
TAGTGAGGGAAAGGCTCACAAGCACGACTA366AAGAGGATGAAGGGAAGGTAGATGAAAAGGAAATGAGAAAATAATCCAT
PUILF90TB ZM_0.6_1.0_KB Zea mays genomic clone ZMMBTa0608P12, genomic survey sequence.
CG066907.1:25-43
GGGGAAGGCTCACAAGCACGACTA25AAGAGGATGAAGGGAAGGTAGATGAAAAGGAAATGAGAAAATAATCCAT
Zea mays cultivar B73 chromosome 2 clone ZMMBBb-324K2, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces.
AC204033.3:88449-88467
TAGTGAGGGAAAGGCTCACAAGCACGACTA88449AAGAGGATGAAGGGAAGGTAGATGAAAAGGAAATGAGAAAATAATCCAT
Quercus dentata isolate Qdleaves-2020 chromosome 3.
CP116446.1:3176041-3176059
ATGGGATGCTTGATTCACGGGAAATATGGC3176041AAGAGGATGAAGGGAAGGTGGGGGATATTGTGGAGGAGTACTACACGGC
Quercus dentata isolate Qdleaves-2020 chromosome 3.
CP116446.1:57110204-57110222
ATGGGATGCTTGATTCACAGGAAATATGGC57110204AAGAGGATGAAGGGAAGGTGGGGGAATATTGTGGAGGAGTACTACACGG
Quercus dentata isolate Qdleaves-2020 chromosome 3.
CP116446.1:57704054-57704072
ATGGGATGCTTGATTCACGGGAAATATGGC57704054AAGAGGATGAAGGGAAGGTGGGGGAATATTGTGGAGGAGTACTACATGG
Spirodela intermedia genome assembly, chromosome: 7.
LR743594.1:695246-695264
TGGGGGGAAAGGAGGAGAAGGACAGTGGAG695246AAGAGGATGAAGGGAAGGTGAAAACCAGAGGGAGAGCTCAGAAGAGGGG
Spirodela intermedia genome assembly, chromosome: 7.
LR746270.1:699152-699170
TGGGGGGAAAGGAGGAGAAGGACAGTGGAG699152AAGAGGATGAAGGGAAGGTGAAAACCAGAGGGAGAGCTCAGAAGAGGGG
Avena insularis genome assembly, chromosome: 1D.
OU342345.1:43668535-43668553
TAGGCCAAGAATACATATCCGACAAGGAGG43668535AAGAGGATGAAGGGAAGGTGGTTGGAGTGGCCGGTTTGGCCTTTGCCAA
Avena sativa genome assembly, chromosome: 1D.
OU342392.1:41404604-41404622
TAGGCCAAGAATACATATCCGACAAGGAGG41404604AAGAGGATGAAGGGAAGGTGGTTGGAGTGGCCGGTTTGGCCTTTGCCAA
Haloplanus rubicundus strain CBA1112 chromosome, complete genome.
CP031148.1:1996881-1996899
CTCGCTATCTCCTCGTTCCCCTTCCCGGTG1996881AAGAGGATGAAGGGAAGGTCCGGGGACTGCTCGCGGACGGCATCCAGAA
Haloplanus rubicundus strain CBA1113 chromosome, complete genome.
CP031150.1:2266315-2266333
CTCGCTATCTCCTCGTTCCCCTTCCCGGTG2266315AAGAGGATGAAGGGAAGGTCCGGGGACTGCTCGCGGACGGCATCCAGAA
Chitinophaga pinensis isolate 1 genome assembly, chromosome: 1.
LR632928.1:54314-54332
GCGATATACACCAGTGCCACCACGGCAAGG54314AAGAGGATGAAGGGAAGGTTACCGGTGATCATTTTATAATTGATCCGCA
Chitinophaga pinensis isolate 2 genome assembly, chromosome: 1.
LR632929.1:54315-54333
GCGATATACACCAGTGCCACCACGGCAAGG54315AAGAGGATGAAGGGAAGGTTACCGGTGATCATTTTATAATTGATCCGCA
Bombus hypnorum genome assembly, chromosome: 3.
OU427022.1:11308133-11308151
AAAAGCAACGAAATTATAATCAGGATTGGA11308133AAGAGGATGAAGGGAAGGTTCCGATGAAAATGTAAGTCGACCGAATATT
Lypha dubia genome assembly, chromosome: 1.
OX371260.1:5486587-5486605
AATTTGTACAAAATCGCCGCCGTTTACGCA5486587AAGAGGATGAAGGGAAGGTGGATTTTGTGGTCACAACGTTAGCTGGTGC
HIV-1 isolate YNBS48IDU from China gag protein (gag) and pol protein (pol) genes, partial cds.
KT625853.1:305-323
ACAAAAGCAAGCAAAAAACACAGCAGGCAA305AAGAGGATGAAGGGAAGGTCAGTCAAAATTATCCTATAGTGCAAAACCT
HIV-1 isolate 19BS021 from China gag protein (gag) gene, partial cds.
OM453971.1:263-281
ACAAAATTCAGCAAAAAATGCARCAGGCAA263AAGAGGATGAAGGGAAGGTCAGTCAAAATTATCCTATAGTACAAAACCT
Hyperoodon ampullatus genome assembly, chromosome: 14.
OX457069.1:66794447-66794465
AACAGTCAGTCAGCAGCTTCTCCTAACTTT66794447ACCTTCCCTTCATCCTCTTGGCCCCCACCCTAATTCAGGCCTTGCCCTC
Myotis daubentonii genome assembly, chromosome: 17.
OY725376.1:26776693-26776711
TGTATGCGACCCATTGCATGCACAGATTTA26776693ACCTTCCCTTCATCCTCTTACCATGTGGGAACTGGGCTTGGGAACTCTG
Martes martes genome assembly, chromosome: 3.
OY734065.1:27685551-27685569
GGCAGTGCAGAGGCTAACATATAGAGACAA27685551ACCTTCCCTTCATCCTCTTTCTCTTCTTGTCCTTCTCGGTATCTCCCTC
Lateolabrax maculatus linkage group 12 genomic sequence, sequence.
CP032586.1:6600637-6600655
TTAACATCACAGGTGGAGGTCGTGAATGAG6600637ACCTTCCCTTCATCCTCTTTAATTTAACTCACCATTCAGGAATTCATTT
Microcaecilia unicolor genome assembly, chromosome: 9.
LR594640.1:220882948-220882966
CCATCAAAATGCTATTTTTGCCCCCCTCCT220882948ACCTTCCCTTCATCCTCTTCTCTTCCTCGTATCACCCCCCCCCCCAAAC
Silurus aristotelis genome assembly, chromosome: 11.
OX327763.1:26844597-26844615
ACACTTATTTTTCTTTCGCTCATTACATCA26844597ACCTTCCCTTCATCCTCTTTTATTTTAGGTTTTTAAAATATACTGAGAG
Mobula hypostoma genome assembly, chromosome: 1.
OY992592.1:10606583-10606601
TTACTGAAGTCCATGTAGACAACATCTACT10606583ACCTTCCCTTCATCCTCTTTCCTGGTAACCTCCTCGAAAAACCCTAATA
Mobula hypostoma genome assembly, chromosome: 20.
OY992612.1:61187496-61187514
TCATCTTCATCACATCTCCCTTCCTGAAGC61187496ACCTTCCCTTCATCCTCTTCATCACATCTCCCTTCCTGAATCACCTTCC
Chroicocephalus ridibundus genome assembly, chromosome: 1.
OZ001733.1:108216129-108216147
AGGCTGAAAATTTATACAGTCCTTCTTTTC108216129ACCTTCCCTTCATCCTCTTTTCATTCCTTTCTTCACTCTTGCTTATCCT
Larus fuscus genome assembly, chromosome: 1.
OZ010753.1:107184373-107184391
AGGCTGAAAATTTATACAGTCCTTCTTTTC107184373ACCTTCCCTTCATCCTCTTTTCATTCCTTTCTTCACTCTTGCCTATCCT
ZMMBBc0169N17f ZMMBBc (EcoRI) Zea mays subsp. mays genomic clone ZMMBBc0169N17 5', genomic survey sequence.
CG699640.1:920-938
TGGGATTATTTTCTCATTTCCTTTTCATCT920ACCTTCCCTTCATCCTCTTTAGTCGTGCTTGGGAGCCTTTCCCTCACTA
ZCY139B06.F ZCY Panicum hallii genomic 5', genomic survey sequence.
KO533805.1:687-705
CTCTCTTTTTCTTTTTCTCTTCTTCTTCCT687ACCTTCCCTTCATCCTCTTTATCTCTCTCTTTCTTCTCCTCTCTCCTTT
Avena atlantica genome assembly, chromosome: 1A.
OU342733.1:49322746-49322764
TTGGCAAAGGCCAAACCGTCCACTCCAACC49322746ACCTTCCCTTCATCCTCTTCCTCATTGTCGGATATGTATTCTTGGCATA
Pyrodictium abyssi AV2 DNA, complete genome.
AP028907.1:2205869-2205887
TCGACGCCTCGACGGTCCAGTGTATCGCGT2205869ACCTTCCCTTCATCCTCTTGGAGAGCCAGACGTACATTGTACTTCCATC
Chitinophaga pinensis isolate 3 genome assembly, chromosome: 1.
LR632930.1:6224525-6224543
TGCGGATCAATTATAAAATGATCACCGGTA6224525ACCTTCCCTTCATCCTCTTCCTTGCCGTGGTGGCACTGGTGTATATCGC
Platycnemis pennipes genome assembly, chromosome: 4.
OW121850.1:49580643-49580661
TCCTGACGCCTTCCCAACCCTTCCCCACTC49580643ACCTTCCCTTCATCCTCTTCCTCCTCCCATCTCTTCCCGGACCGAAACA
Platycnemis pennipes genome assembly, chromosome: 7.
OW121853.1:76098929-76098947
TTATCTGCTTGTCTTCATTATCTTTCCTCC76098929ACCTTCCCTTCATCCTCTTCTTTTTTCTTCTTTATGGTCCATCGCCTTT
Drepana falcataria genome assembly, chromosome: 2.
OX243923.1:11212533-11212551
GGCCGTGGCCAGACAGTATAGCGCCATTCT11212533ACCTTCCCTTCATCCTCTTTTTTTATTGTTTCTGATAGCGTGAGTTCCT
Rhorus exstirpatorius genome assembly, chromosome: 6.
OY751318.1:14521703-14521721
GCGCTGGCGCACACCCCTCGCGAGTTTTCC14521703ACCTTCCCTTCATCCTCTTTCCATCCGCCACCGACCCTTCAGCATCCAT

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/AAGAGGATGAAGGGAAGGT
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : AAGAGGATGAAGGGAAGGT | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.227 | 0.218 | search_plus_done; http://172.18.8.135:50400/match?q=AAGAGGATGAAGGGAAGGT&k=0&no_gap=0&offset=0&limit=50
0.386 | 0.159 | search_minus_done; http://172.18.8.135:50400/match?q=ACCTTCCCTTCATCCTCTT&k=0&no_gap=0&offset=0&limit=29
0.399 | 0.013 | cgi_end;

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