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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-03-14 18:51:57, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

RR1AG91JQ RR1(CS) Raphanus raphanistrum subsp. maritimus cDNA 3', mRNA sequence.
EV530504.1:89-110
ACTGAGATCTTACTAAACCAGACCAAGACC89AAGCCCAATGATGGAAGACAAGAAGCTTAAACACAACAGTACACAAGAAGAG
RR1AT44JQ RR1(CS) Raphanus raphanistrum subsp. maritimus cDNA 3', mRNA sequence.
EV531355.1:38-59
ACTGAGATCTTACTAAACCAGACCAAGACC38AAGCCCAATGATGGAAGACAAGAAGCTTAGACACAACAGTACACAAGAAGAG
RR3BB26JQ RR3(NY) Raphanus raphanistrum subsp. raphanistrum cDNA 3', mRNA sequence.
EV546884.1:77-98
ACTGAGATCTTACGAAACCAGACCAAGACC77AAGCCCAATGATGGAAGACAAGAAGCTTAAACACAACAGTACACAAGAAGAG
RR4A890JQ RR4(PB) Raphanus raphanistrum subsp. landra cDNA 3', mRNA sequence.
EV571399.1:32-53
ACTGAGATCTTACTAAACCAGACCAAGACC32AAGCCCAATGATGGAAGACAAGAAGCTTATACACAACAGTACACAAGAAGAG
RS1AF92JQ RS1(AR) Raphanus sativus var. oleiformis cDNA 3', mRNA sequence.
EW720310.1:39-60
ACTGAGATGTTACTAAACCAGACCAAGACC39AAGCCCAATGATGGAAGACAAGAAGCTTAGACACAACAGTACACAAGAAGAG
RS3B918JQ RS3(RT) Raphanus sativus cDNA 3', mRNA sequence.
EW739498.1:41-62
ACTGAGATCTCACTAAACCAGACCAAGACC41AAGCCCAATGATGGAAGACAAGAGGCTTAGACACAACAGTACACAAGAAGAG
RR4CK62JQ RR4(PB) Raphanus raphanistrum subsp. landra cDNA 3', mRNA sequence.
EX776721.1:59-80
ACTGAGATCTTACTAAACCAGACCAAGGCC59AAGCCCAATGATGGAAGACAAGAAGCTTAAACACAACAGTACACAAGAAGAG
RR1D373JQ RR1(CS) Raphanus raphanistrum subsp. maritimus cDNA 3', mRNA sequence.
EY893420.1:61-82
ACTGAGATCTTACTAAACCAGACCAAGACC61AAGCCCAATGATGGAAGACAAGAAGCTTAAACACAACAGTACACAAGAAGAG
RR1EC60JQ RR1(CS) Raphanus raphanistrum subsp. maritimus cDNA 3', mRNA sequence.
EY896431.1:126-147
ACTGAAATCTTACTAAACCAAACCAAGACC126AAGCCCAATGATGGAAGACAAGAAGCTTAAACACAACAGTACACAAGAAGAG
RR3D973JQ RR3(NY) Raphanus raphanistrum subsp. raphanistrum cDNA 3', mRNA sequence.
EY909872.1:91-112
ACTGAGATCTTACGAAACCAGACCAAGACC91AAGCCCAATGATGGAAGACAAGAAGCTTAGACACAACAGTACACAAGAAGAG
RS1E884JQ RS1(AR) Raphanus sativus var. oleiformis cDNA 3', mRNA sequence.
EY928914.1:101-122
ACTGAGATCTTACTAAACCAGACCAAGACC101AAGCCCAATGATGGAAGACAAGAAGCTTAGACACAACAGTACACAAGAAGAG
RR1EP15JQ RR1(CS) Raphanus raphanistrum subsp. maritimus cDNA 3', mRNA sequence.
FD529179.1:1-22
1AAGCCCAATGATGGAAGACAAGAAGCTTAAACACAACAGTACACAAGAAGAG
RR2F867JQ RR2(MS) Raphanus raphanistrum subsp. raphanistrum cDNA 3', mRNA sequence.
FD538490.1:106-127
ACTGAGATCTTACTAAACCAGACCAAGACC106AAGCCCAATGATGGAAGACAAGACTTAGACACAACAGTACACAAGAAGAGAG
RS2FU91JQ RS2(RS) Raphanus sativus cDNA 3', mRNA sequence.
FD575574.1:63-84
ACTGAGATGTTACTAAACCAGACCAAGACC63AAGCCCAATGATGGAAGACAAGAAGCTTAAACACAACAGTACACAAGAAGAG
RR1GG95JQ RR1(CS) Raphanus raphanistrum subsp. maritimus cDNA 3', mRNA sequence.
FD959860.1:56-77
ACTGAGATCTTACTAAACCAGACCAAGACC56AAGCCCAATGATGGAAGACAAGAAGCTTAGACACAACAGTACACAAGAAGAG
RR1H325JQ RR1(CS) Raphanus raphanistrum subsp. maritimus cDNA 3', mRNA sequence.
FD961282.1:56-77
ACTGAGATCTTACTAAACCAGACCAAGACC56AAGCCCAATGATGGAAGACAAGAAGCTTAGACACAACAGTACACAAGAAGAG
RR1AG91TF RR1(CS) Raphanus raphanistrum subsp. maritimus cDNA 5', mRNA sequence.
EV525879.1:706-727
CTCTTCTTGTGTACTGTTGTGTCTAAGCTT706CTTGTCTTCCATCATTGGGCTTGGTCTTGGTCTGGTTTAGTAAGATCTCAGT
RR1AT44TF RR1(CS) Raphanus raphanistrum subsp. maritimus cDNA 5', mRNA sequence.
EV527015.1:64-85
CTCTTCTTGTGTACTGTTGTGTCTAAGCTT64CTTGTCTTCCATCATTGGGCTTGGTCTTGGTCTGGTTTAGTAAGATCTCAGT
RR3BB26TF RR3(NY) Raphanus raphanistrum subsp. raphanistrum cDNA 5', mRNA sequence.
EV551853.1:706-727
CTCTTCTTGTGTACTGTTGTGTCTAAGCTT706CTTGTCTTCCATCATTGGGCTTGGTCTTGGTCTGGTTTCGTAAGATCTCAGT
RR4A890TF RR4(PB) Raphanus raphanistrum subsp. landra cDNA 5', mRNA sequence.
EV566220.1:734-755
CTCTTCTTGTGTACTGTTGTGTCTAAGCTT734CTTGTCTTCCATCATTGGGCTTGGTCTTGGTCTGGTTTAGTAAGATCTCAGT
RS1AF92TF RS1(AR) Raphanus sativus var. oleiformis cDNA 5', mRNA sequence.
EW715638.1:721-742
CTCTTCTTGTGTACTGTTGTGTCTAAGCTT721CTTGTCTTCCATCATTGGGCTTGGTCTTGGTCTGGTTTAGTAACATCTCAGT
RR1D373TF RR1(CS) Raphanus raphanistrum subsp. maritimus cDNA 5', mRNA sequence.
EY896997.1:704-725
CTCTTCTTGTGTACTGTTGTGTCTAAGCTT704CTTGTCTTCCATCATTGGGCTTGGTCTTGGTCTGGTTTAGTAAGATCTCAGT
RS2GJ90TF RS2(RS) Raphanus sativus cDNA 5', mRNA sequence.
FD947175.1:710-731
CTCTTCTTGTGTACTGTTGTGTCTAAGCTT710CTTGTCTTCCATCATTGGGCTTGGT
TSA: Brassica rapa x Raphanus sativus RNA, contig: BB3_8487.
FX792877.1:739-760
CTCTTCTTGTGTACTGTTGTGTCTAAGCTT739CTTGTCTTCCATCATTGGGCTTGGTCTTGGTCTGGTTTAGTAAGATCTCAGT
TSA: Raphanus sativus RS22413 mRNA sequence.
JT806960.1:697-718
CTCTTCTTGTGTACTGTTGTGTCTAAGCTT697CTTGTCTTCCATCATTGGGCTTGGTCTTGGTCTGGTTTAGTAAGATCTCAGT
Raphanus sativus genome assembly, chromosome: 1.
LR778310.1:3898898-3898919
CTCTTCTTGTGTACTGTTGTGTCTAAGCTT3898898CTTGTCTTCCATCATTGGGCTTGGTCTTGGTCTGGTTTAGTAAGATCTCAGT
Raphanus sativus genome assembly, chromosome: 6.
OY743212.1:3898898-3898919
CTCTTCTTGTGTACTGTTGTGTCTAAGCTT3898898CTTGTCTTCCATCATTGGGCTTGGTCTTGGTCTGGTTTAGTAAGATCTCAGT

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/AAGCCCAATGATGGAAGACAAG
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : AAGCCCAATGATGGAAGACAAG | format : html | download : | debug : 

0.008 | 0.008 | search_start;
1.248 | 1.239 | search_plus_done; http://172.18.8.135:50400/match?q=AAGCCCAATGATGGAAGACAAG&k=0&no_gap=0&offset=0&limit=50
1.904 | 0.656 | search_minus_done; http://172.18.8.135:50400/match?q=CTTGTCTTCCATCATTGGGCTT&k=0&no_gap=0&offset=0&limit=34
1.911 | 0.007 | cgi_end;

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