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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-03-14 20:59:31, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

RS2AT35TF RS2(RS) Raphanus sativus cDNA 5', mRNA sequence.
EW725541.1:85-104
AGATAGATCCCAAATTTGATTCTCACAGGA85AAGCCCTACCCTAGATCCGACCCGACCCCCCAAAAATCGAAGACTCTTTT
RS2DR26TF RS2(RS) Raphanus sativus cDNA 5', mRNA sequence.
EY939094.1:71-90
AGATAGATCCCAAATTTGATTCTCACAGGA71AAGCCCTACCCTAGATCCGACCCGACCCCCCAAAAAATCGAAGACTCTTT
RR3FF28TF RR3(NY) Raphanus raphanistrum subsp. raphanistrum cDNA 5', mRNA sequence.
FD551036.1:65-84
AGATAGATCCCAAATTTGATTCTCACAGGA65AAGCCCTACCCTAGATCCGACCCGACCCCCCCAAAAAATCGAAGACTCTT
Raphanus sativus mRNA, clone: RSCS03H09, 5' end sequence.
FY447047.1:41-60
AGATAGATCCCAAATTTGATTCTCACAGGA41AAGCCCTACCCTAGATCCGACCCGACCCCCCAAAAAAAATCGAAGACTCT
TSA: Raphanus sativus var. sativus RNA, contig: WG3_12404.
FX659782.1:101-120
AGATAGATCCCAAATTTGATTCTCACAGGA101AAGCCCTACCCTAGATCCGACCCGACCCCCCAAAAAAAATCGAAGACTCT
Raphanus sativus genome assembly, chromosome: 6.
LR778315.1:8278290-8278309
AGATAGATCCCAAATTTGATTCTCACAGGA8278290AAGCCCTACCCTAGATCCGACCCGACCCCCCAAAAAAAATCGAAGACTCT
TSA: Brassica rapa x Raphanus sativus RNA, contig: BB3_3135.
FX790047.1:1367-1386
AAAGAGTCTTCGATTTTTTTGGGGGTCGGG1367TCGGATCTAGGGTAGGGCTTTCCTGTGAGAATCAAATTTGGGATCTATCT
Raphanus sativus genome assembly, chromosome: 3.
OY743209.1:27243992-27244011
AGAGTCTTCGATTTTTTTTGGGGGGTCGGG27243992TCGGATCTAGGGTAGGGCTTTCCTGTGAGAATCAAATTTGGGATCTATCT

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/AAGCCCTACCCTAGATCCGA
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : AAGCCCTACCCTAGATCCGA | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.568 | 0.559 | search_plus_done; http://172.18.8.135:50400/match?q=AAGCCCTACCCTAGATCCGA&k=0&no_gap=0&offset=0&limit=50
0.679 | 0.112 | search_minus_done; http://172.18.8.135:50400/match?q=TCGGATCTAGGGTAGGGCTT&k=0&no_gap=0&offset=0&limit=44
0.681 | 0.002 | cgi_end;

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