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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-03 13:16:29, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Vicia faba genome assembly, chromosome: 3.
OX451738.1:1551124231-1551124250
ATGGAGGCGCCCATTCCCCCGGGCATGGAG1551124231AAGCCTCCACACTTGAAAGAATATGATGGAGTCGCCGACCCGGTCAATCA
Vicia faba genome assembly, chromosome: 4.
OX451739.1:181210835-181210854
ATGGAGGCTCCCATTCCCCCGGGCATGGAG181210835AAGCCTCCACACTTGAAAGAGTATGACGAAGTCGCCGACCCGGTCGATCA
Vicia faba genome assembly, chromosome: 4.
OX451739.1:1051947915-1051947934
ATGGAGGCGCCCATTCCCCCGGGCATGGAG1051947915AAGCCTCCACACTTGAAAGAATATGATGGAGTCACCGAATCGGTCGATCA
Vicia faba genome assembly, chromosome: 4.
OX451739.1:1056683572-1056683591
ATAGAGGCGCCCATTCCCCCGGGTATGGAG1056683572AAGCCTCCACACTTGAAAGAGCATGACGGAGTCGCCGACCCGGTTGATCA
Vicia faba genome assembly, chromosome: 5.
OX451740.1:769357233-769357252
ATGGAGGCGCCCATTCCCCCGGGCATGGAG769357233AAGCCTCCACACTTGAAAGAGTATGATGGAGTCGCTAACCCGGTCGATCA
Montipora capitata genome assembly, chromosome: 4.
OX421448.1:47124447-47124466
GTAGAATTAGACACCCACTTTCTCATATTA47124447AAGCCTCCACACTTGAAAGATGATTTCAGATTCTTGAACATCTCGAAGAC
Dianthus caryophyllus mRNA, clone: CES07A11, 5' end sequence.
FY384752.1:602-621
GATCATCCACTTTGCATTATTCAGATGACA602TCTTTCAAGTGTGGAGGCTTTGCAATGGGTGTTCAAACCAGCCATGCAAT
Dianthus caryophyllus mRNA, clone: CES16D20, 5' end sequence.
FY388242.1:591-610
GATCATCCACTTTGCATTATTCAGATGACA591TCTTTCAAGTGTGGAGGCTTTGCAATGGGTGTTCAAACCAGCCATGCAAT
Dianthus caryophyllus mRNA, clone: CES19L17, 5' end sequence.
FY389557.1:571-590
GATCATCCACTTTGCATTATTCAGATGACA571TCTTTCAAGTGTGGAGGCTTTGCAATGGGTGTTCAAACCAGCCATGCAAT
Dianthus caryophyllus mRNA, clone: CES19O03, 5' end sequence.
FY389615.1:599-618
GATCATCCACCTTGCATTATTCAGATGACA599TCTTTCAAGTGTGGAGGCTTTGCAATGGGTGTTCAAACCAGCCATGCAAT
Dianthus caryophyllus mRNA, clone: CES20_E05, 5' end sequence.
FY389756.1:602-621
GATCATCCACTTTGCATTATTCAGATGACA602TCTTTCAAGTGTGGAGGCTTTGCAATGGGTGTTCAAACCAGCCATGCAAT
TSA: Dianthus caryophyllus mRNA, contig: CAK09.580.C1.
FX297700.1:601-620
GATCATCCACTTTGCATTATTCAGATGACA601TCTTTCAAGTGTGGAGGCTTTGCAATGGGTGTTCAAACCAGCCATGCAAT
Vicia faba genome assembly, chromosome: 3.
OX451738.1:1111755070-1111755089
TGATCGACCGGGTCGGCGACTCCGTCATAC1111755070TCTTTCAAGTGTGGAGGCTTCTCCATGCCCGGGGGAATGGGCGCCTCCAT
Vicia faba genome assembly, chromosome: 3.
OX451738.1:1331656750-1331656769
TGATCGAATGGGTCGGCGACTCCGTCATAC1331656750TCTTTCAAGTGTGGAGGCTTCTCCATTCCCGGGGGAATGGGCGCCTTCAT
Vicia faba genome assembly, chromosome: 4.
OX451739.1:1470408855-1470408874
TGATCGACCGGGTCGGCGACTCCATCATAC1470408855TCTTTCAAGTGTGGAGGCTTCTCCTTGCCCCGGGGAATGGGCGCCTCCAT
Vicia faba genome assembly, chromosome: 5.
OX451740.1:506869759-506869778
TGATCAACCGGGTCGGCGACTCCGTCATAC506869759TCTTTCAAGTGTGGAGGCTTCTCCATGCCCGGGGGAATGAGCGTCTCCAT
Montipora capitata genome assembly, chromosome: 5.
OX421449.1:26323551-26323570
GTCTTCGAGATGTTCAAGAATCTGAAATAA26323551TCTTTCAAGTGTGGAGGCTTTAATAGGCGAAAGAGGGGTGTCTAATTCTA

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/AAGCCTCCACACTTGAAAGA
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : AAGCCTCCACACTTGAAAGA | format : html | download : | debug : 

0.008 | 0.008 | search_start;
0.167 | 0.159 | search_plus_done; http://172.18.8.135:50400/match?q=AAGCCTCCACACTTGAAAGA&k=0&no_gap=0&offset=0&limit=50
0.687 | 0.520 | search_minus_done; http://172.18.8.135:50400/match?q=TCTTTCAAGTGTGGAGGCTT&k=0&no_gap=0&offset=0&limit=44
0.694 | 0.007 | cgi_end;

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