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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2026-03-06 23:58:21, GGGenome : DDBJ release 139.0 (Sep, 2025)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Mycobacteriaceae bacterium isolate 13f2e1dc-704c-4a1a-a308-c20bf1f9ed42 genome assembly, chromosome: 1.
OZ257258.1:1042407-1042426
GTCGGCGTGGGGTGGGTGTCGAACAGCATA1042407AAGCGAACAGTAGCCACCACTCTCGGTAAACCCGGCGTCACTCTCTGCTG
RR2AA75TF RR2(MS) Raphanus raphanistrum subsp. raphanistrum cDNA 5', mRNA sequence.
EV535738.1:147-166
TCTCTATGGGCAACGTGAACGCGAGAGACG147AAGCGAACAGTAGCCACCACCACCACCACAACAGCAACAACAACAACAAC
RR2BD59TF RR2(MS) Raphanus raphanistrum subsp. raphanistrum cDNA 5', mRNA sequence.
EV539084.1:82-101
TCTCTATGGGCAACGTGAACGCGAGAGACG82AAGCGAACAGTAGCCACCACCACCGCCACAACAGCAACAACAACAACGCA
RR2BD89TF RR2(MS) Raphanus raphanistrum subsp. raphanistrum cDNA 5', mRNA sequence.
EV539111.1:50-69
TCTCTATGGGCAACGTGAACGCGAGAGACG50AAGCGAACAGTAGCCACCACCACCACCACAACAGCAACAACAACAACGCA
RR3AL42TF RR3(NY) Raphanus raphanistrum subsp. raphanistrum cDNA 5', mRNA sequence.
EV549470.1:105-124
TCTCTATGGGCAACGTGAACGCGAGAGACG105AAGCGAACAGTAGCCACCACCACCACAACAACAACAACAACAACGCATCA
RR1CM10TF RR1(CS) Raphanus raphanistrum subsp. maritimus cDNA 5', mRNA sequence.
EX749348.1:87-106
TCTCTATGGGCAACGTGAACGCGAGAGACG87AAGCGAACAGTAGCCACCACCACCACAACAACAACGCATCTCAACTCGAA
RR2E548TF RR2(MS) Raphanus raphanistrum subsp. raphanistrum cDNA 5', mRNA sequence.
EY908285.1:186-205
TCTCTATGGGCAACGTGAACGCGAGAGACG186AAGCGAACAGTAGCCACCACCACCACCACAACAACAACAACAACAACAAC
RS1F426TF RS1(AR) Raphanus sativus var. oleiformis cDNA 5', mRNA sequence.
FD562843.1:86-105
TCTCTATGGGCAACGTGAACGCGAGAGACG86AAGCGAACAGTAGCCACCACCACCACAACAACAACAACAACAACAACAAC
RS3H603TF RS3(RT) Raphanus sativus cDNA 5', mRNA sequence.
FD958308.1:89-108
TCTCTATGGGCAACGTGAACGCGAGAGACG89AAGCGAACAGTAGCCACCACCACCACCACAACAGCAACAACAACAACGCA
Raphanus sativus mRNA, clone: RSCS13I22, 5' end sequence.
FY450562.1:38-57
TCTCTATGGGCAACGTGAACGCGAGAGACG38AAGCGAACAGTAGCCACCACCACCACAACAACAACAACAACAACAACGCA
Raphanus sativus genome assembly, chromosome: 9.
LR778318.1:15309580-15309599
TCTCTATGGGCAACGTGAACGCGAGAGACG15309580AAGCGAACAGTAGCCACCACCACCACAACAACAACGCATCTCAACTCGAA
TSA: Brassica rapa x Raphanus sativus RNA, contig: BB3_53098.
FX794532.1:379-398
TTCGAGTTGAGATGCGTTGTTGTTGTGGTG379GTGGTGGCTACTGTTCGCTTCGTCTCTCGCGTTCACGTTGCCCATAGAGA
Raphanus sativus genome assembly, chromosome: 8.
OY743205.1:13584702-13584721
TTCGAGTTGAGATGCGTTGTTGTTGTGGTG13584702GTGGTGGCTACTGTTCGCTTCGTCTCTCGCGTTCACGTTGCCCATAGAGA
Narraga tessularia genome assembly, chromosome: 7.
OZ257188.1:9094300-9094319
ATTACTGTTACGATCCCTTTTGCAATAAAG9094300GTGGTGGCTACTGTTCGCTTATTTCGAGATTTCTCTATTATAGCGAAGGG

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/AAGCGAACAGTAGCCACCAC
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : AAGCGAACAGTAGCCACCAC | format : html | download : | debug : 

0.009 | 0.009 | search_start;
1.896 | 1.887 | search_plus_done; http://172.18.8.135:50900/match?q=AAGCGAACAGTAGCCACCAC&k=0&no_gap=0&offset=0&limit=50
3.118 | 1.222 | search_minus_done; http://172.18.8.135:50900/match?q=GTGGTGGCTACTGTTCGCTT&k=0&no_gap=0&offset=0&limit=39
3.120 | 0.002 | cgi_end;

GGGenome by @meso_cacase at DBCLS
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