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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-03-14 15:56:34, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Sequence 33250 from patent US 7569389.
GP684368.1:307-326
AGCAACCCCTTGCAATTGAGGTGCGTGTGC307AAGCGGTGGAAATCCCTAGTACTGGATCCCCAATTCGTGAAGAAGCATTT
Sequence 50956 from patent US 7569389.
GP689005.1:307-326
AGCAACCCCTTGCAATTGAGGTGCGTGTGC307AAGCGGTGGAAATCCCTAGTACTGGATCCCCAATTCGTGAAGAAGCATTT
Sequence 50856 from patent US 9029636.
HK959919.1:95-114
AGCAATCCGCTGCAATTGAGGTGCGTGTGC95AAGCGGTGGAAATCCCTAGTGGTGGATCCCCAATTCGTGAAGAAGCATTT
san19a07.y1 Gm-c1084 Glycine max cDNA clone SOYBEAN CLONE ID: Gm-c1084-4238 5' similar to TR:Q9SAB5 Q9SAB5 F25C20.23, mRNA sequence.
BQ081072.1:271-290
AGCAATCCGCTGCAATTGAGGTGCGTGTGC271AAGCGGTGGAAATCCCTAGTGGTGGATCCCCAATTCGTGAAGAAGCATTT
san48h01.y1 Gm-c1052 Glycine max cDNA clone SOYBEAN CLONE ID: Gm-c1052-3049 5' similar to TR:Q9SAB5 Q9SAB5 F25C20.23, mRNA sequence.
BQ094562.1:271-290
AGCAATCCGCTGCAATTGAGGTGCGTGTGC271AAGCGGTGGAAATCCCTAGTGGTGGATCCCCAATTCGTGAAGAAGCATTT
Glycine max cDNA, clone: GMFL02-22-F14, 5'end.
DB963101.1:312-331
AGCAACCCCTTGCAATTGAGGTGCGTGTGC312AAGCGGTGGAAATCCCTAGTACTGGATCCCCAATTCGTGAAGAAGCATTT
ocpsga0_0077_E12.ab1 Soybean immature seed full-length-enriched cDNA library Glycine max cDNA, mRNA sequence.
HO014601.1:173-192
AGCAATCCGCTGCAATTGAGGTGCGTGTGC173AAGCGGTGGAAATCCCTAGTGGTGGATCCCCAATTCGTGAAGAAGCATTT
Glycine max cultivar Williams 82 chromosome 13.
CP126438.1:32751467-32751486
AGCAACCCCTTGCAATTGAGGTGCGTGTGC32751467AAGCGGTGGAAATCCCTAGTACTGGATCCCCAATTCGTGAAGAAGCATTT
sas80h02.y1 Gm-c1036 Glycine max cDNA clone SOYBEAN CLONE ID: Gm-c1036-10708 5' similar to TR:Q9SAB5 Q9SAB5 F25C20.23, mRNA sequence.
BU761863.1:421-440
AAATGCTTCTTCACGAATTGGGGATCCAGT421ACTAGGGATTTCCACCGCTTGCACACGCACCTCAATTGCAAGGGGTTGCT
GLRAM39TF JCVI-SOY3 Glycine max cDNA 5', mRNA sequence.
FK025169.1:310-329
AAATGCTTCTTCACGAATTGGGGATCCACC310ACTAGGGATTTCCACCGCTTGCACACGCACCTCAATTGCAGCGGATTGCT
GLRAS88TF JCVI-SOY3 Glycine max cDNA 5', mRNA sequence.
FK026336.1:310-329
AAATGCTTCTTCACGAATTGGGGATCCACC310ACTAGGGATTTCCACCGCTTGCACACGCACCTCAATTGCAGCGGATTGCT
ocpsga0_0235_G06.ab1 Soybean immature seed full-length-enriched cDNA library Glycine max cDNA, mRNA sequence.
HO026830.1:304-323
AAATGCTTCTTCACGAATTGGGGATCCACC304ACTAGGGATTTCCACCGCTTGCACACGCACCTCAATTGCAGCGGATTGCT
Soybean clone JCVI-FLGm-13N19 unknown mRNA.
BT092999.1:310-329
AAATGCTTCTTCACGAATTGGGGATCCACC310ACTAGGGATTTCCACCGCTTGCACACGCACCTCAATTGCAGCGGATTGCT
Glycine max cultivar Williams 82 chromosome 15.
CP126440.1:8016494-8016513
AAATGCTTCTTCACGAATTGGGGATCCACC8016494ACTAGGGATTTCCACCGCTTGCACACGCACCTCAATTGCAGCGGATTGCT
Medicago lupulina genome assembly, chromosome: 4.
OY283142.1:44349806-44349825
GTACAAGTCCATGGTGGGTTCCCAAAAATG44349806ACTAGGGATTTCCACCGCTTGTATTTTCGTTGAGAATGGTTGGAACACCT

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/AAGCGGTGGAAATCCCTAGT
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : AAGCGGTGGAAATCCCTAGT | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.490 | 0.481 | search_plus_done; http://172.18.8.135:50400/match?q=AAGCGGTGGAAATCCCTAGT&k=0&no_gap=0&offset=0&limit=50
0.860 | 0.371 | search_minus_done; http://172.18.8.135:50400/match?q=ACTAGGGATTTCCACCGCTT&k=0&no_gap=0&offset=0&limit=42
0.865 | 0.005 | cgi_end;

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