GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-03-14 22:45:15, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

RR1B016TF RR1(CS) Raphanus raphanistrum subsp. maritimus cDNA 5', mRNA sequence.
EV527608.1:9-30
GGAACCCC9AAGCGTAAAGATGCGGTCACTACTCTTGCCGCCGGCGAGCTCTCCCGGCGTA
RR4CR60TF RR4(PB) Raphanus raphanistrum subsp. landra cDNA 5', mRNA sequence.
EX773441.1:8-29
GAACCCC8AAGCGTAAAGATGCGGTCACTACTCTTGCCGCCGGCGAGCTCTCCCGGCGTA
RS1D134TF RS1(AR) Raphanus sativus var. oleiformis cDNA 5', mRNA sequence.
EY929596.1:44-65
GGCCAACTCGCAACTTTACTCTTTAACCCC44AAGCGTAAAGATGCGGTCACTACTCTTGCCGCCGGCGAGCTCTCCCGGCGTA
RS2EC86TF RS2(RS) Raphanus sativus cDNA 5', mRNA sequence.
EY940963.1:9-30
GGAACCCC9AAGCGTAAAGATGCGGTCACTACTCTTGCCGCCGGCGAGCTCTCCCGGCGTA
RR4G553TF RR4(PB) Raphanus raphanistrum subsp. landra cDNA 5', mRNA sequence.
FD986983.1:9-30
GGAACCCC9AAGCGTAAAGATGCGGTCACTACTCTTGCCGCCGGCGAGCTCTCCCGGCGTA
TSA: Brassica rapa x Raphanus sativus RNA, contig: BB3_10182.
FX746201.1:75-96
GACGAACTCGCAACTTTACTCTTTAACCCC75AAGCGTAAAGATGCGGTCACTACTCTTGCCGCCGGCGAGCTCTCCCGGCGTA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/AAGCGTAAAGATGCGGTCACTA
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : AAGCGTAAAGATGCGGTCACTA | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.458 | 0.449 | search_plus_done; http://172.18.8.135:50400/match?q=AAGCGTAAAGATGCGGTCACTA&k=0&no_gap=0&offset=0&limit=50
0.473 | 0.016 | search_minus_done; http://172.18.8.135:50400/match?q=TAGTGACCGCATCTTTACGCTT&k=0&no_gap=0&offset=0&limit=44
0.473 | 0.000 | cgi_end;

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