GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-04 07:18:45, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Desulfurococcus mucosus DSM 2162, complete genome.
CP002363.1:937057-937075
ATCGTAGCCGATGAAGTAGTGAACGGGTAC937057AAGCGTTCCCTCGCATTAGAGGGGTTCCTCAGGAAGCGGGTTAGCAGCC
Taurulus bubalis genome assembly, chromosome: 21.
OU342731.1:2031163-2031181
CCGCGAGCTGAAAGGGCCGCGTAGCGCGTG2031163CTAATGCGAGGGAACGCTTCACGGGAACGCCATCTTTTGTGTTCAGCGT
Malus hybrid cultivar cultivar Flame chromosome 11.
CP141920.1:2540387-2540405
ACATTCATAAAGCTCGAGTTAAACGAGCGG2540387CTAATGCGAGGGAACGCTTTGCTAAAGGGTTGGAGAAATAGAGACGAAT
Malus hybrid cultivar cultivar Flame chromosome 11.
CP141937.1:2615102-2615120
ACATTCATAAAGCTCAAGTTAAACGAGCGG2615102CTAATGCGAGGGAACGCTTTGCTAAAGGGTTGGAGAAATAGAGACGAAT
Malus hybrid cultivar cultivar Royalty chromosome 11.
CP141963.1:2694819-2694837
ACATTCATAAAGCTCGAGTTAAACGAGCGG2694819CTAATGCGAGGGAACGCTTTGCTAAAGGGTTGGAGAAATAGAGACGAAT
Malus hybrid cultivar cultivar SH6 chromosome 11.
CP143368.1:2601662-2601680
ACATTCATAAAGCTCGAGTTAAACGAGCGG2601662CTAATGCGAGGGAACGCTTTGCTAAAGGGTTGGAGAAATAGAGACGAAT
Malus sylvestris genome assembly, chromosome: 11.
OU696513.1:2709383-2709401
ACATTCATAAAGCTCGAGTTAAACGAGCGG2709383CTAATGCGAGGGAACGCTTTGCTAAAGGGTTGGAGAAATAGAGACGAAT
Malus domestica genome assembly, chromosome: 11.
OU696687.1:2697662-2697680
ACATTCATAAAGCTCGAGTTAAACGAGCGG2697662CTAATGCGAGGGAACGCTTTGCTAAAGGGTTGGAGAAATAGAGACGAAT
Malus domestica genome assembly, chromosome: 11.
OU744552.1:2774633-2774651
ACATTCATAAAGCTCGAGTTAAACGAGCGG2774633CTAATGCGAGGGAACGCTTTGCTAAAGGGTTGGAGAAATAGAGACGAAT
Malus domestica genome assembly, chromosome: 11.
OU744963.1:2814585-2814603
ACATTCATAAAGCTCGAGTTAAACGAGCGG2814585CTAATGCGAGGGAACGCTTTGCTAAAGGGTTGGAGAAATAGAGACGAAT
Malus domestica genome assembly, chromosome: 11.
OU745001.1:2758892-2758910
ACATTCATAAAGCTCGAGTTAAACGAGCGG2758892CTAATGCGAGGGAACGCTTTGCTAAAGGGTTGGAGAAATAGAGACGAAT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/AAGCGTTCCCTCGCATTAG
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : AAGCGTTCCCTCGCATTAG | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.264 | 0.255 | search_plus_done; http://172.18.8.135:50400/match?q=AAGCGTTCCCTCGCATTAG&k=0&no_gap=0&offset=0&limit=50
0.385 | 0.121 | search_minus_done; http://172.18.8.135:50400/match?q=CTAATGCGAGGGAACGCTT&k=0&no_gap=0&offset=0&limit=49
0.392 | 0.007 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).