GGGenome Help | English

データベース：
 

ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-03 12:43:47, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

RTDR2_2_B04.g1_A021 Loblolly pine roots recovering from drought DR2 Pinus taeda cDNA clone RTDR2_2_B04_A021 5', mRNA sequence.
CF388373.1:593-612
CCGAAGAGCATGGGTATGGAGATGCAGAAG593AAGCTATAAAGCATGGTATGGATGAAATGAGTGCCGAATTTCTTGCCGCA
RTDS2_8_E12.g1_A021 Drought-stressed loblolly pine roots DS2 Pinus taeda cDNA clone RTDS2_8_E12_A021 5', mRNA sequence.
CF394955.1:112-131
CCGAAGAGCATGGGTATGGAGATGCAGAAG112AAGCTATAAAGCATGGTATGGATGAAATGAGTGCCGAATTTCTTGCCGCA
RTWW2_19_A02.g1_A021 Well-watered loblolly pine roots WW2 Pinus taeda cDNA clone RTWW2_19_A02_A021 5', mRNA sequence.
CF473946.1:27-46
AGAGCATGGGTATGGAGATGCAGAAG27AAGCTATAAAGCATGGTATGGATGAAATGAGTGCCGAATTTCTTGCCGCA
RTCNT1_50_F11.g1_A029 Root control Pinus taeda cDNA clone RTCNT1_50_F11_A029 5', mRNA sequence.
CF670522.1:78-97
CTGAAGAGCATGGGTATGGAAATGCAGAAG78AAGCTATAAAGCATGGTATGGATGAAATGAGTGCCGAATTTCTTGCCGCA
FLD1_5_A05.b1_A029 Root flooded Pinus taeda cDNA clone FLD1_5_A05_A029 3', mRNA sequence.
CO158151.1:438-457
CCGAAGAGCATGGGTATGGAGATGCAGAAG438AAGCTATAAAGCATGGTATGGATGAAATGAGTGCCGAATTTCTTGCCGCA
FLD1_11_D10.b1_A029 Root flooded Pinus taeda cDNA clone FLD1_11_D10_A029 3', mRNA sequence.
CO159071.1:354-373
CCGAAGAGCATGGGTATGGAGATGCAGAAG354AAGCTATAAAGCATGGTATGGATGAAATGAGTGCCGAATTTCTTGCCGCA
FLD1_54_G03.g1_A029 Root flooded Pinus taeda cDNA clone FLD1_54_G03_A029 5', mRNA sequence.
CO165481.1:254-273
CCGAAGAGCATGGGTATGGAGATGCAGAAG254AAGCTATAAAGCATGGTATGGATGAAATGAGTGCCGAATTTCTTGCCGCA
Pinus pinaster bud EST.
CT583529.1:548-567
CTGAAGAGCATGGGTATGGAGATGCAGAAG548AAGCTATAAAGCATGGTATGGATGAAATGAGTGCTGAATTTCTTGCCGCA
RTPQ1_1_A11.b2_A032 Roots treated with paraquat Pinus taeda cDNA clone RTPQ1_1_A11_A032 3', mRNA sequence.
CX712199.1:500-519
CCGAAGAGCATGGGTATGGAGATGCAGAAG500AAGCTATAAAGCATGGTATGGATGAAATGAGTGCCGAATTTCTTGCTGCA
RTNIT1_30_A06.b1_A029 Roots minus nitrogen Pinus taeda cDNA clone RTNIT1_30_A06_A029 3', mRNA sequence.
DR060777.1:354-373
CTGAAGAGCATGGGTATGGAAATGCAGAAG354AAGCTATAAAGCATGGTATGGATGAAATGAGTGCCGAATTTCTTGCCGCA
RTFEPL1_7_C05.g1_A029 Roots plus added iron Pinus taeda cDNA clone RTFEPL1_7_C05_A029 5', mRNA sequence.
DR078895.1:657-676
CCGAAGAGCATGGGTATGGAGATGCAGAAG657AAGCTATAAAGCATGGTATGGATGAAATGAGTGCCG
STRR1_10_A04.g1_A033 Stem Response Resistant Pinus taeda cDNA clone STRR1_10_A04_A033 5', mRNA sequence.
DR093788.1:133-152
CCGAAGAGCATGGGTATGGAGATGCAGAAG133AAGCTATAAAGCATGGTATGGATGAAATGAGTGCCGAATTTCTTGCCGCA
RTCU1_16_H05.g1_A029 Roots plus added copper Pinus taeda cDNA clone RTCU1_16_H05_A029 5', mRNA sequence.
DR743589.1:392-411
CCGAAGAGCATGGGTATGGAGATGCAGAAG392AAGCTATAAAGCATGGTATGGATGAAATGAGTGCCGAATTTCTTGCCGCA
GQ02783.B3_C03 GQ099: Mixed spruce tissues Picea glauca cDNA clone GenomeQuebec_Id:GQ02783_C03 5', mRNA sequence.
DV995128.1:711-730
CTGAAGAGCATGGGTATGGAGATGCAGAAG711AAGCTATAAAGCATGGTATGGATGCAATGAGTGCCGAGTTTCTTGCCNNN
GQ03209.B7_K04 GQ032 - Shoot tip (Normalized library) Picea glauca cDNA clone GQ03209_K04 5', mRNA sequence.
EX365022.1:346-365
CTGAAGAGCATGGGTATGGAGATGCAGAAG346AAGCTATAAAGCATGGTATGGATGCAATGAGTGCCGAGTTTCTTGCCGCA
GQ03404.B7_I05 GQ034 - Needles - Mid-season Picea glauca cDNA clone GQ03404_I05 5', mRNA sequence.
EX395294.1:81-100
CTGAAGAGCATGGGTATGGAGATGCAGAAG81AAGCTATAAAGCATGGTATGGATGCAATGAGTGCCGAGTTTCTTGCCGCA
GQ03417.B7_A24 GQ034 - Needles - Mid-season Picea glauca cDNA clone GQ03417_A24 5', mRNA sequence.
EX399900.1:689-708
CTGAAGAGCATGGGTATGGAGATGCAGAAG689AAGCTATAAAGCATGGTATGGATGCAATGAGTGCCGAGTTTCTTGCCGCA
GQ0133.B3.r_F03 GQ013 - Elongating ROOTS tips - sapplings Picea glauca cDNA clone GQ0133_F03 5', mRNA sequence.
GE477309.2:687-706
CTGAAGAGCATGGGTATGGAGATGCAGAAG687AAGCTATAAAGCATGGTATGGATGCAATGAGTGCCGAGTTTCTTGCCGCA
PCO0114.CR_K11 Pco01-Bark-Wounded-Norm (PCO01) Pinus contorta cDNA clone PCO0114_K11 3', mRNA sequence.
GT249813.1:501-520
CCGAAGAGCATGGGTATGGAGATGCAGAAG501AAGCTATAAAGCATGGTATGGATGAAATGAGTGCCGAATTTCTTGCCGCA
PCO0114.C21_K11 Pco01-Bark-Wounded-Norm (PCO01) Pinus contorta cDNA clone PCO0114_K11 5', mRNA sequence.
GT253202.1:535-554
CCGAAGAGCATGGGTATGGAGATGCAGAAG535AAGCTATAAAGCATGGTATGGATGAAATGAGTGCCGAATTTCTTGCCGCA
PBA018.C21_N24 Pba01-Bark-wounded-Norm (PBA01) Pinus banksiana cDNA clone PBA018_N24 5', mRNA sequence.
GW744027.1:771-790
CTGAAGAGCATGGATATGGAGATGCAGAAG771AAGCTATAAAGCATGGTATGAATGCAATGAGTGCCGAGTTTCTTGCTGTA
Pinus sylvestris EST, clone WZ0APSBC1YB18FM1.
HE636498.1:428-447
CTGAAGAGCATGGGTATGGAGATGCAGAAG428AAGCTATAAAGCATGGTATGGATGAAATGAGTGCTGAATTTCTTGCCGCA
TSA: Larix kaempferi PEMC24039.Lakaproemb mRNA sequence.
JR154671.1:628-647
CTGAAGAGCATGGCTATGGAGATGCAGAGG628AAGCTATAAAGCATGGTATGGATGCAATGAGCGCCGAGTTTCTTACTGCA
Picea glauca clone GQ03817_K10 mRNA sequence.
BT117353.1:1897-1916
CTGAAGAGCATGGGTATGGAGATGCAGAAG1897AAGCTATAAAGCATGGTATGGATGCAATGAGTGCCGAGTTTCTTGCCGCA
FLD1_52_D07.g1_A029 Root flooded Pinus taeda cDNA clone FLD1_52_D07_A029 5', mRNA sequence.
CO165142.1:229-248
TGCGGCAAGAAATTCGGCACTCATTTCATC229CATACCATGCTTTATAGCTTCTTCTGCATCTCCATACCCATGCTCTTCGG
FLD1_56_D06.b1_A029 Root flooded Pinus taeda cDNA clone FLD1_56_D06_A029 3', mRNA sequence.
CO165662.1:742-761
TGCGGCAAGAAATTCGGCACTCATTTCATC742CATACCATGCTTTATAGCTTCTTCTGCATCTCCATACCCATGCTCTTCGG
WS01019.B21_K18 SS-R-N-A-11 Picea sitchensis cDNA clone WS01019_K18 3', mRNA sequence.
CO223683.1:394-413
TGCGGCAAGAAACTCGGCACTCATTGCATC394CATACCATGCTTTATAGCTTCTTCTGCATCTCCATACCCATGCTCTTCAG
Pinus pinaster bud EST.
CT575576.1:373-392
TGCGGCAAGAAATTCAGCACTCATTTCATC373CATACCATGCTTTATAGCTTCTTCTGCATCTCCATACCCATGCTCTTCAG
WS02740.CR_I02 SS-IL-A-FL-14 Picea sitchensis cDNA clone WS02740_I02 3, mRNA sequence.
DR515408.1:375-394
TGCGGCAAGAAACTCGGCACTCATTGCATC375CATACCATGCTTTATAGCTTCTTCTGCATCTCCATACCCATGCTCTTCAG
WS0313.B21_K08 WS-MC-A-17 Picea glauca cDNA clone WS0313_K08 3, mRNA sequence.
DR546664.1:393-412
TGCGGCAAGAAACTCGGCACTCATTGCATC393CATACCATGCTTTATAGCTTCTTCTGCATCTCCATACCCATGCTCTTCAG
WS0324.B21_N19 WS-MC-N-A-20 Picea glauca cDNA clone WS0324_N19 3, mRNA sequence.
DR555084.1:394-413
TGCGGCAAGAAACTCGGCACTCATTGCATC394CATACCATGCTTTATAGCTTCTTCTGCATCTCCATACCCATGCTCTTCAG
GQ03209.SP6_K04 GQ032 - Shoot tip (Normalized library) Picea glauca cDNA clone GQ03209_K04 3', mRNA sequence.
EX365384.1:381-400
TGCGGCAAAAAACTCGGCACTCATTGCATC381CATACCATGCTTTATAGCTTCTTCTGCATCTCCATACCCATGCTCTTCAG
GQ03322.SP6.r_B12 GQ033 - Terminal leader (Normalized library) Picea glauca cDNA clone GQ03322_B12 3', mRNA sequence.
GO363866.1:388-407
TGCGGCGAGAAACTCGGCACTCATTGCATC388CATACCATGCTTTATAGCTTCTTCTGCATCTCCATACCCATGCTCTTCAG
GQ03817.SP6.r_K10 GQ038 - Stem - Active growth Picea glauca cDNA clone GQ03817_K10 3', mRNA sequence.
GR223168.1:387-406
TGCGGCAAGAAACTCGGCACTCATTGCATC387CATACCATGCTTTATAGCTTCTTCTGCATCTCCATACCCATGCTCTTCAG
PBA018.CR_N24 Pba01-Bark-wounded-Norm (PBA01) Pinus banksiana cDNA clone PBA018_N24 3', mRNA sequence.
GW744349.1:380-399
TACAGCAAGAAACTCGGCACTCATTGCATT380CATACCATGCTTTATAGCTTCTTCTGCATCTCCATATCCATGCTCTTCAG
Pinus sylvestris EST, clone WZ0APSBC1YB18NM1.
HE636499.1:357-376
TGCGGCAAGAAATTCAGCACTCATTTCATC357CATACCATGCTTTATAGCTTCTTCTGCATCTCCATACCCATGCTCTTCAG
Pinus taeda isolate 8144 anonymous locus CL221Contig2_04 genomic sequence.
FJ131873.1:14-33
CACTCATTTCATC14CATACCATGCTTTATAGCTTCTTCTGCATTTCCATACCCATGCTCTTCGG
Pinus taeda isolate 8153 anonymous locus CL221Contig2_04 genomic sequence.
FJ131874.1:14-33
CACTCATTTCATC14CATACCATGCTTTATAGCTTCTTCTGCATTTCCATACCCATGCTCTTCGG
Pinus taeda isolate 8148 anonymous locus CL221Contig2_04 genomic sequence.
FJ131875.1:14-33
CACTCATTTCATC14CATACCATGCTTTATAGCTTCTTCTGCATTTCCATACCCATGCTCTTCAG
Pinus taeda isolate 8145 anonymous locus CL221Contig2_04 genomic sequence.
FJ131876.1:14-33
CACTCATTTCATC14CATACCATGCTTTATAGCTTCTTCTGCATTTCCATACCCATGCTCTTCGG
Pinus taeda isolate 8154 anonymous locus CL221Contig2_04 genomic sequence.
FJ131877.1:14-33
CACTCATTTCATC14CATACCATGCTTTATAGCTTCTTCTGCATTTCCATACCCATGCTCTTCAG
Pinus taeda isolate 8149 anonymous locus CL221Contig2_04 genomic sequence.
FJ131878.1:14-33
CACTCATTTCATC14CATACCATGCTTTATAGCTTCTTCTGCATTTCCATACCCATGCTCTTCGG
Pinus taeda isolate 8151 anonymous locus CL221Contig2_04 genomic sequence.
FJ131879.1:14-33
CACTCATTTCATC14CATACCATGCTTTATAGCTTCTTCTGCATTTCCATACCCATGCTCTTCAG
Pinus taeda isolate 8147 anonymous locus CL221Contig2_04 genomic sequence.
FJ131880.1:14-33
CACTCATTTCATC14CATACCATGCTTTATAGCTTCTTCTGCATTTCCATACCCATGCTCTTCAG
Pinus taeda isolate 8160 anonymous locus CL221Contig2_04 genomic sequence.
FJ131881.1:14-33
CACTCATTTCATC14CATACCATGCTTTATAGCTTCTTCTGCATTTCCATACCCATGCTCTTCAG
Pinus taeda isolate 8152 anonymous locus CL221Contig2_04 genomic sequence.
FJ131882.1:14-33
CACTCATTTCATC14CATACCATGCTTTATAGCTTCTTCTGCATTTCCATACCCATGCTCTTCAG
Pinus taeda isolate 8159 anonymous locus CL221Contig2_04 genomic sequence.
FJ131883.1:14-33
CACTCATTTCATC14CATACCATGCTTTATAGCTTCTTCTGCATTTCCATACCCATGCTCTTCAG
Pinus taeda isolate 8157 anonymous locus CL221Contig2_04 genomic sequence.
FJ131884.1:14-33
CACTCATTTCATC14CATACCATGCTTTATAGCTTCTTCTGCATCTCCATACCCATGCTCTTCGG
Pinus taeda isolate 8146 anonymous locus CL221Contig2_04 genomic sequence.
FJ131885.1:14-33
CACTCATTTCATC14CATACCATGCTTTATAGCTTCTTCTGCATTTCCATACCCATGCTCTTCGG
Pinus taeda isolate 8161 anonymous locus CL221Contig2_04 genomic sequence.
FJ131886.1:14-33
CACTCATTTCATC14CATACCATGCTTTATAGCTTCTTCTGCATTTCCATACCCATGCTCTTCGG
Pinus taeda isolate 8156 anonymous locus CL221Contig2_04 genomic sequence.
FJ131887.1:14-33
CACTCATTTCATC14CATACCATGCTTTATAGCTTCTTCTGCATTTCCATACCCATGCTCTTCGG
Pinus taeda isolate 8158 anonymous locus CL221Contig2_04 genomic sequence.
FJ131888.1:14-33
CACTCATTTCATC14CATACCATGCTTTATAGCTTCTTCTGCATTTCCATACCCATGCTCTTCAG
Pinus taeda isolate 8155 anonymous locus CL221Contig2_04 genomic sequence.
FJ131889.1:14-33
CACTCATTTCATC14CATACCATGCTTTATAGCTTCTTCTGCATTTCCATACCCATGCTCTTCAG
Pinus taeda isolate 8150 anonymous locus CL221Contig2_04 genomic sequence.
FJ131890.1:14-33
CACTCATTTCATC14CATACCATGCTTTATAGCTTCTTCTGCATTTCCATACCCATGCTCTTCGG
Haliclystus octoradiatus genome assembly, chromosome: 5.
OU744450.1:10522718-10522737
ATTGACTGATACGTTAACATCTATTATAAC10522718CATACCATGCTTTATAGCTTATTCATTCTCATTAGCTAACGGTGAGTTAC

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/AAGCTATAAAGCATGGTATG
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : AAGCTATAAAGCATGGTATG | format : html | download : | debug : 

0.009 | 0.009 | search_start;
1.300 | 1.291 | search_plus_done; http://172.18.8.135:50400/match?q=AAGCTATAAAGCATGGTATG&k=0&no_gap=0&offset=0&limit=50
2.189 | 0.889 | search_minus_done; http://172.18.8.135:50400/match?q=CATACCATGCTTTATAGCTT&k=0&no_gap=0&offset=0&limit=26
2.209 | 0.021 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).