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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-03-14 20:59:36, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Raphanus sativus mRNA, clone: RSCS03P22, 5' end sequence.
FY447230.1:323-342
GAAGATGCTCTATCCGTCTCAACCGGGACA323AAGCTGCACCTTCACGTTCTACAACCCTTTTTGGGAGAAGTACCCACCTC
Raphanus sativus mRNA, clone: RSCS10K07, 5' end sequence.
FY449529.1:118-137
GAAGATGCTCTATCCGTCTCAACCGGGACA118AAGCTGCACCTTCACGTTCTACAACCCTTTTTGGGAGAAGTACCCACCTC
Raphanus sativus mRNA, clone: RSCS18I19, 5' end sequence.
FY452349.1:333-352
GAAGATGCTCTATCCGTCTCAACCGGGACA333AAGCTGCACCTTCACGTTCTACAACCCTTTTTGGGAGAAGTACCCACCTC
TSA: Raphanus sativus var. sativus RNA, contig: WG3_11317.
FX665892.1:206-225
GAAGATGCTCTATCCGTCTCAACCGGGACA206AAGCTGCACCTTCACGTTCTACAACCCTTTTTGGGAGAAGTACCCACCTC
TSA: Brassica rapa x Raphanus sativus RNA, contig: BB3_54788.
FX792510.1:265-284
GAAGATGCTCTATCCGTCTCAACCGGGACA265AAGCTGCACCTTCACGTTCTACAACCCTTTTTGGGAGAAGTACCCACCTC
Raphanus sativus genome assembly, chromosome: 8.
LR778317.1:28501345-28501364
GAAGATGCTCTATCCGTCTCAACCGGGACA28501345AAGCTGCACCTTCACGTTCTACAACCCTTTTTGGGAGAAGTACCCACCTC
Carterocephalus palaemon genome assembly, chromosome: 11.
OX155648.1:2043521-2043540
TACTAGACTGTTTTCTCTTTCACCATTAGA2043521AAGCTGCACCTTCACGTTCTGACATAGGCTATATAATAATATTATACATT
Carterocephalus palaemon genome assembly, chromosome: 12.
OX155649.1:13382824-13382843
TACTAGACTGTTTTCTCTTTCACCATTAGA13382824AAGCTGCACCTTCACGTTCTGACATAGGCTATATAATAATATTATACATT
Arvicola amphibius genome assembly, chromosome: 1.
LR862380.1:9164055-9164074
TTTAACTTTGGACAGCCGAGGTCTTTCTAA9164055AGAACGTGAAGGTGCAGCTTTCTCTCCTTTGTGGTGTGCTTACATCATGC
Raphanus sativus genome assembly, chromosome: 7.
OY743213.1:4478037-4478056
GAGGTGGGTACTTCTCCCAAAAAGGGTTGT4478037AGAACGTGAAGGTGCAGCTTTGTCCCGGTTGAGACGGATAGAGCATCTTC

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/AAGCTGCACCTTCACGTTCT
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : AAGCTGCACCTTCACGTTCT | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.434 | 0.425 | search_plus_done; http://172.18.8.135:50400/match?q=AAGCTGCACCTTCACGTTCT&k=0&no_gap=0&offset=0&limit=50
0.529 | 0.095 | search_minus_done; http://172.18.8.135:50400/match?q=AGAACGTGAAGGTGCAGCTT&k=0&no_gap=0&offset=0&limit=42
0.530 | 0.002 | cgi_end;

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