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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-11 22:28:00, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Malus x domestica mRNA, clone: A10E, mature fruit skin, up-regulated gene by UV-B.
AB273183.1:149-172
CTTTTTTTTCTCTCTAATAAAAAGAAAAAA149AAGGAAGAACACATTGATTTAGCAACATATGTTGATGTTTCCCAACTACACTTC
030121ABLC002401HT (ABLC) Braeburn cell culture three days after subculture Malus domestica cDNA clone ABLC002401, mRNA sequence.
CN908538.1:223-246
TTTTTTTTTCTCTCTAATAAAAAGAAAAAC223AAGGAAGAACACATTGATTTAGCAACATATGTTGATGTTTCCCAACTACACTTC
Mdrta1014G11_e34856.g1 Apple_EST_Mdrta Malus domestica cDNA 5' similar to sp|O65780|GAE1_CYATE UDP-glucose 4-epimerase GEPI42 (Galactowaldenase) (UDP-galactose 4-epimerase) pir|T10496 UDPglucose 4-epi
GO548825.1:67-90
CTTTTTTTTCTCTCTAATAAAAAGAAAAAA67AAGGAAGAACACATTGATTTAGCAACATATGTTGATGTTTCCCAACTACACTTC
Malus x robusta genome assembly, chromosome: 17.
OY720341.1:17960214-17960237
CTTTTTTTTCTCTCTAATAAAAAGAAAAAA17960214AAGGAAGAACACATTGATTTAGCAACATATGTTGATGTTTCCCAACTACACTTC
Mdfw2036k05.y1 Mdfw Malus domestica cDNA clone Mdfw2036k05 5' similar to TR:O65780 O65780 UDP-GALACTOSE 4-EPIMERASE, mRNA sequence.
CN579639.1:395-418
GAAGTGTAGTTGGGAAACATCAACATATGT395TGCTAAATCAATGTGTTCTTCCTTTTTTTTCTTTTTATTAGAGAGAAAAAAAAG
Mddb5002p07.y1 Mddb Malus domestica cDNA clone Mddb5002p07 5' similar to TR:O65780 O65780 UDP-GALACTOSE 4-EPIMERASE, mRNA sequence.
CO723359.1:375-398
GAAGTGTAGTTGGGAATCATCAACATATGT375TGCTAAATCAATGTGTTCTTCCTTTTTTTTCTTTTTATTAGAGAGAAAAAAAAG
Md0416 Venturia inaequalis challenged cDNA suppression subtractive hybridization library Malus domestica cDNA similar to uridine diphosphate glucose epimerase, mRNA sequence.
FE969496.1:364-387
GAAGTGTAGTTGGGAAACATCAACATATGT364TGCTAAATCAATGTGTTCTTCCTTTTTTTTCTTTTTATTAGAGAGAAAAAAAAG
Mdrtb1018F24.g1 Apple_EST_Mdrtb Malus domestica cDNA 5' similar to pir|S62783 UDPglucose 4-epimerase (EC 5.1.3.2) - Arabidopsis thaliana emb|CAA90941.1| uridine diphosphate glucose epimerase [Arabidop
GO514880.1:383-406
GAAGTGTAGTTGGGAAACATCAACATATGT383TGCTAAATCAATGTGTTCTTCCTTTTTTTTCTTTTTATTAGAGAGAAAAAAAAG
Malus x domestica UGE mRNA for UDP-galactose, complete cds.
AB272752.1:1281-1304
GAAGTGTAGTTGGGAAACATCAACATATGT1281TGCTAAATCAATGTGTTCTTCCTTTTTTTTCTTTTTATTAGAGAGAAAAAAAAG
Malus hybrid cultivar cultivar Flame chromosome 4.
CP141913.1:7584445-7584468
GAAGTGTAGTTGGGAAACATCAACATATGT7584445TGCTAAATCAATGTGTTCTTCCTTTTTTTTCTTTTTATTAGAGAGAAAAAAAAG
Malus hybrid cultivar cultivar Flame chromosome 4.
CP141930.1:8289981-8290004
GAAGTGTAGTTGGGAAACATCAACATATGT8289981TGCTAAATCAATGTGTTCTTCCTTTTTTTTCTTTTTATTAGAGAGAAAAAAAAG
Malus hybrid cultivar cultivar Royalty chromosome 4.
CP141956.1:7719959-7719982
GAAGTGTAGTTGGGAAACATCAACATATGT7719959TGCTAAATCAATGTGTTCTTCCTTTTTTTTCTTTTTATTAGAGAGAAAAAAAAG
Malus hybrid cultivar cultivar Royalty chromosome 4.
CP141973.1:7580217-7580240
GAAGTGTAGTTGGGAAACATCAACATATGT7580217TGCTAAATCAATGTGTTCTTCCTTTTTTTTCTTTTTATTAGAGAGAAAAAAAAG
Malus hybrid cultivar cultivar SH6 chromosome 4.
CP143361.1:7973209-7973232
GAAGTGTAGTTGGGAAACATCAACATATGT7973209TGCTAAATCAATGTGTTCTTCCTTGTTTTTCTTTTTATTAGAGAGAAAAAAAAA
Malus hybrid cultivar cultivar SH6 chromosome 4.
CP143378.1:7403910-7403933
GAAGTGTAGTTGGGAAACATCAACATATGT7403910TGCTAAATCAATGTGTTCTTCCTTGTTTTTTTTTTTATTAGAGAGAAAAAAAAA
Malus sylvestris genome assembly, chromosome: 4.
OU696506.1:8244622-8244645
GAAGTGTAGTTGGGAAACATCAACATATGT8244622TGCTAAATCAATGTGTTCTTCCTTTTTTTTCTTTTTATTAGAGAGAGAAAAAAA
Malus domestica genome assembly, chromosome: 4.
OU696680.1:8134919-8134942
GAAGTGTAGTTGGGAAACATCAACATATGT8134919TGCTAAATCAATGTGTTCTTCCTTGTTTTTCTTTTTATTAGAGAGAAAAAAAAG
Malus domestica genome assembly, chromosome: 4.
OU744545.1:8123114-8123137
GAAGTGTAGTTGGGAAACATCAACATATGT8123114TGCTAAATCAATGTGTTCTTCCTTGTTTTTCTTTTTATTAGAGAGAAAAAAAAA
Malus domestica genome assembly, chromosome: 4.
OU744956.1:8001379-8001402
GAAGTGTAGTTGGGAAACATCAACATATGT8001379TGCTAAATCAATGTGTTCTTCCTTTTTTTTCTTTTTATTAGAGAGAAAAAAAAG
Malus domestica genome assembly, chromosome: 4.
OU744994.1:8239686-8239709
GAAGTGTAGTTGGGAAACATCAACATATGT8239686TGCTAAATCAATGTGTTCTTCCTTTTTTTTCTTTTTATTAGAGAGAAAAAAAAG
Crataegus laevigata genome assembly, chromosome: 7.
OY756944.1:8477936-8477959
GAAGTGTAGTTGGGAAACATCAACATATGT8477936TGCTAAATCAATGTGTTCTTCCTTGTTTTTCTTTTTATTAGAGAAAAAAAAGGG

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/AAGGAAGAACACATTGATTTAGCA
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : AAGGAAGAACACATTGATTTAGCA | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.490 | 0.481 | search_plus_done; http://172.18.8.135:50400/match?q=AAGGAAGAACACATTGATTTAGCA&k=0&no_gap=0&offset=0&limit=50
0.841 | 0.351 | search_minus_done; http://172.18.8.135:50400/match?q=TGCTAAATCAATGTGTTCTTCCTT&k=0&no_gap=0&offset=0&limit=46
0.853 | 0.012 | cgi_end;

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