GGGenome Help | English

データベース：
 

ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-03 11:27:59, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Sequence 3194 from patent US 10006042.
MI847921.1:1081-1100
AACCTGGTGTTGGTAAGACAGCTATTGCCG1081AAGGACTAGCGCAGCGTATTGCCAGTGGAGATGTTCCTGAAACTATTGAA
Sequence 3246 from patent US 10006042.
MI847973.1:921-940
AACCTGGTGTTGGTAAGACAGCTATTGCCG921AAGGACTAGCGCAGCGTATTGCCAGTGGAGATGTTCCTGAAACTATTGAA
Sequence 3194 from patent US 10337023.
MO171088.1:1081-1100
AACCTGGTGTTGGTAAGACAGCTATTGCCG1081AAGGACTAGCGCAGCGTATTGCCAGTGGAGATGTTCCTGAAACTATTGAA
Sequence 3246 from patent US 10337023.
MO171140.1:921-940
AACCTGGTGTTGGTAAGACAGCTATTGCCG921AAGGACTAGCGCAGCGTATTGCCAGTGGAGATGTTCCTGAAACTATTGAA
Sequence 3194 from patent US 10774340.
MV704835.1:1081-1100
AACCTGGTGTTGGTAAGACAGCTATTGCCG1081AAGGACTAGCGCAGCGTATTGCCAGTGGAGATGTTCCTGAAACTATTGAA
Sequence 3246 from patent US 10774340.
MV704887.1:921-940
AACCTGGTGTTGGTAAGACAGCTATTGCCG921AAGGACTAGCGCAGCGTATTGCCAGTGGAGATGTTCCTGAAACTATTGAA
Sequence 3194 from patent US 11499161.
OO872616.1:1081-1100
AACCTGGTGTTGGTAAGACAGCTATTGCCG1081AAGGACTAGCGCAGCGTATTGCCAGTGGAGATGTTCCTGAAACTATTGAA
Sequence 3246 from patent US 11499161.
OO872668.1:921-940
AACCTGGTGTTGGTAAGACAGCTATTGCCG921AAGGACTAGCGCAGCGTATTGCCAGTGGAGATGTTCCTGAAACTATTGAA
BN45.047K02F020102 BN45 Brassica napus cDNA clone BN45047K02, mRNA sequence.
CD836082.1:83-102
AACCTGGTGTTGGTAAGACAGCTATTGCCG83AAGGACTAGCGCAGCGTATTGCTAGTGGAGATGTTCCTGAAACAATTGAA
BN45.050N10F020103 BN45 Brassica napus cDNA clone BN45050N10, mRNA sequence.
CD837034.1:65-84
AACCTGGTGTTGGTAAGACAGCTATTGCCG65AAGGACTAGCGCAGCGTATTGCCAGTGGAGATGTTCCTGAAACTATTGAA
0147060 Brassica napus Etiolated seedlings (pSPORT1) Brassica napus cDNA, mRNA sequence.
EV177822.1:148-167
AACCTGGTGTTGGTAAGACAGCTATTGCCG148AAGGACTAGCGCAGCGTATTGCCACTGGAGATGTTCCTGAAACAATTGAA
BNAPO4GH_T3_041_E07_23JULY2007_055 BNAPO4GH Brassica napus cDNA 5', mRNA sequence.
GR462331.1:96-115
AACCTGGTGTTGGTAAGACAGCTATTGCCG96AAGGACTAGCGCAGCGTATTGCCAGTGGAGATGTTCCTGAAACTATTGAA
f06_03ni_1s.s 03ni Brassica nigra cDNA clone f06_03ni_1s 5, mRNA sequence.
GT076028.1:2-21
G2AAGGACTAGCGCAGCGTATTGCCAGTGGAGATGTTCCTGAAACGATTGAA
TSA: Raphanus sativus var. sativus RNA, contig: WG3_97.
FX658215.1:934-953
AACCTGGTGTTGGTAAGACAGCTATTGCCG934AAGGACTAGCGCAGCGTATTGCCAGTGGAGATGTTCCTGAAACCATTGAA
TSA: Brassica rapa subsp. pekinensis RNA, contig: CF3_64.
FX692475.1:1026-1045
AACCTGGTGTTGGTAAGACAGCTATTGCCG1026AAGGACTAGCGCAGCGTATTGCCAGTGGAGATGTTCCTGAAACTATTGAA
TSA: Brassica rapa x Raphanus sativus RNA, contig: BB3_4129.
FX739190.1:767-786
AACCTGGTGTTGGTAAGACAGCTATTGCCG767AAGGACTAGCGCAGCGTATTGCCAGTGGAGATGTTCCTGAAACTATTGAA
TSA: Brassica rapa x Raphanus sativus RNA, contig: BB3_1721.
FX739456.1:903-922
AACCTGGTGTTGGTAAGACAGCTATTGCCG903AAGGACTAGCGCAGCGTATTGCCAGTGGAGATGTTCCTGAAACCATTGAA
Brassica napus cultivar Xiang5A chromosome 3.
CP123878.1:7160678-7160697
AACCTGGTGTTGGTAAGACAGCTATTGCCG7160678AAGGACTAGCGCAGCGTATTGCCAGTGGAGATGTTCCTGAAACTATTGAA
Brassica napus genome assembly, chromosome: A03.
HG994357.1:7112992-7113011
AACCTGGTGTTGGTAAGACAGCTATTGCCG7112992AAGGACTAGCGCAGCGTATTGCCAGTGGAGATGTTCCTGAAACTATTGAA
Brassica napus genome assembly, chromosome: C03.
HG994367.1:9570898-9570917
AACCTGGTGTTGGTAAGACAGCTATTGCCG9570898AAGGACTAGCGCAGCGTATTGCTAGTGGAGATGTTCCTGAAACAATTGAA
Brassica rapa genome, scaffold: A03.
LR031572.1:7157976-7157995
AACCTGGTGTTGGTAAGACAGCTATTGCCG7157976AAGGACTAGCGCAGCGTATTGCCAGTGGAGATGTTCCTGAAACTATTGAA
Brassica oleracea HDEM genome, scaffold: C3.
LR031872.1:9509814-9509833
AACCTGGTGTTGGTAAGACAGCTATTGCCG9509814AAGGACTAGCGCAGCGTATTGCCAGTGGAGATGTTCCTGAAACAATTGAA
Raphanus sativus genome assembly, chromosome: 6.
LR778315.1:7700110-7700129
AACCTGGTGTTGGTAAGACAGCTATTGCCG7700110AAGGACTAGCGCAGCGTATTGCCAGTGGAGATGTTCCTGAAACCATTGAA
Brassica rapa genome assembly, chromosome: A03.
LS974619.2:7252419-7252438
AACCTGGTGTTGGTAAGACAGCTATTGCCG7252419AAGGACTAGCGCAGCGTATTGCCAGTGGAGATGTTCCTGAAACTATTGAA
B.napus (Topas) clpA mRNA.
X75328.1:781-800
AACCTGGTGTTGGTAAGACAGCTATTGCCG781AAGGACTAGCGCAGCGTATTGCCAGTGGAGTTGTTCGTGAAACTAGTGAA
Falcaria lacertinaria genome assembly, chromosome: 21.
OX602129.1:1535299-1535318
CACTAACGCGTTGCCAGCCCTGCTGTTGAT1535299AAGGACTAGCGCAGCGTATTCTCGAGGAGCACTGGCAACCTTACTCATCG
TSA: Raphanus sativus RS00508 mRNA sequence.
JT785055.1:2059-2078
TTCAATGGTTTCAGGAACATCTCCACTGGC2059AATACGCTGCGCTAGTCCTTCGGCAATAGCTGTCTTACCAACACCAGGTT
TSA: Raphanus sativus RS00510 mRNA sequence.
JT785057.1:2059-2078
TTCAATGGTTTCAGGAACATCTCCACTGGC2059AATACGCTGCGCTAGTCCTTCGGCAATAGCTGTCTTACCAACACCAGGTT
TSA: Raphanus sativus RS00514 mRNA sequence.
JT785061.1:2059-2078
TTCAATGGTTTCAGGAACATCTCCACTGGC2059AATACGCTGCGCTAGTCCTTCGGCAATAGCTGTCTTACCAACACCAGGTT
Brassica napus cultivar Xiang5A chromosome 18.
CP123893.1:69721669-69721688
TTCAATTGTTTCAGGAACATCTCCACTAGC69721669AATACGCTGCGCTAGTCCTTCGGCAATAGCTGTCTTACCAACACCAGGTT
Raphanus sativus genome assembly, chromosome: 3.
OY743209.1:27822172-27822191
TTCAATGGTTTCAGGAACATCTCCACTGGC27822172AATACGCTGCGCTAGTCCTTCGGCAATAGCTGTCTTACCAACACCAGGTT

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/AAGGACTAGCGCAGCGTATT
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : AAGGACTAGCGCAGCGTATT | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.906 | 0.897 | search_plus_done; http://172.18.8.135:50400/match?q=AAGGACTAGCGCAGCGTATT&k=0&no_gap=0&offset=0&limit=50
0.987 | 0.080 | search_minus_done; http://172.18.8.135:50400/match?q=AATACGCTGCGCTAGTCCTT&k=0&no_gap=0&offset=0&limit=24
0.990 | 0.004 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).