GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-05 17:56:26, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Brassica oleracea var. viridis mRNA, clone: KALE-131N17, 5' end sequence.
DK505976.1:497-516
CTCCACAAACTTACCCAGTGTAGAGGATGA497AAGGCACCATAACGAAGACGAAGGTGAGATAGTAGAAGAAGAAAAAGAAA
Brassica oleracea var. viridis mRNA, clone: KALE-050E11, 3' end sequence.
DK534376.1:729-748
CTCCACAAACTTACCCAGTGTAGAGGATGA729AAGGCACCATAACGAAGACGAAGGTGAGATAGTAGAAGAAG
BNYS4DCT_UP_030_C03_22MAR2005_027 Brassica napus seeds BNYS4DCT Brassica napus cDNA 5', mRNA sequence.
EE477853.1:474-493
CTCCACAAACTTACCCAGTGTAGAGAATGA474AAGGCACCATAACGAAGACGAAGGTGAGATAGTAGAAGAAGAGAAAGACA
odh36g04.b1 B.oleracea002 Brassica oleracea genomic, genomic survey sequence.
BH954941.1:367-386
CTCCACAAACTTACCCAGTGTAGAGAATGA367AAGGCACCATAACGAAGACGAAGGTGAGATAGTAGAAGAAGAAAAAGAAA
Brassica napus genome assembly, chromosome: C07.
HG994371.1:44308561-44308580
CTCCACAAACTTACCCAGTGTAGAGAATGA44308561AAGGCACCATAACGAAGACGAAGGTGAGATAGTAGAAGAAGAAAAAGAAA
Brassica oleracea HDEM genome, scaffold: C7.
LR031876.1:47178191-47178210
CTCCACAAACTTACCCAGTGTAGAGAATGA47178191AAGGCACCATAACGAAGACGAAGGTGAGATAGTAGAAGAAGAAAAAGAAA
Brassica napus cultivar Xiang5A chromosome 19.
CP123894.1:11494062-11494081
TTTCTTTTTCTTCTTCTACTATCTCACCTT11494062CGTCTTCGTTATGGTGCCTTTCATTCTCTACACTGGGTAAGTTTGTGGAG

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/AAGGCACCATAACGAAGACG
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : AAGGCACCATAACGAAGACG | format : html | download : | debug : 

0.008 | 0.008 | search_start;
0.231 | 0.223 | search_plus_done; http://172.18.8.135:50400/match?q=AAGGCACCATAACGAAGACG&k=0&no_gap=0&offset=0&limit=50
0.252 | 0.021 | search_minus_done; http://172.18.8.135:50400/match?q=CGTCTTCGTTATGGTGCCTT&k=0&no_gap=0&offset=0&limit=44
0.252 | 0.001 | cgi_end;

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