GGGenome Help | English

データベース：
 

ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-03 12:10:06, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

TSA: Brassica rapa x Raphanus sativus RNA, contig: BB3_5513.
FX737260.1:1305-1324
GAGAAGAGCTAATGAAAGTGAAAGTTGGAG1305AAGGTAACGGTGGCAGTGAGGGGCTCTTGTTCCATGTGAATTTGCTCTTC
oei55c03.g1 B.oleracea002 Brassica oleracea genomic, genomic survey sequence.
BZ013373.1:91-110
GAGAAGAGCTAATGAAAGTGAAAGTTGGAG91AAGGTAACGGTGGCAGTGAGGGGCTCTTGTTCCATGTGAATTTGTTTCTT
BOT01-102N9TR BOT01 Brassica oleracea genomic clone BOT01-102N9, genomic survey sequence.
FI752797.1:341-360
GAGAAGAGCTAATGAAAGTGAAAGTTGGAG341AAGGTAACGGTGGCAGTGAGGGGCTCTTGTTCCATGTGAATTTGTTTCTT
Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB021P15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces.
AC189262.2:8556-8575
GAGAAGAGCTAATGAAAGTGAAAGTTGGAG8556AAGGTAACGGTGGCAGTGAGGGGCTCTTGTTCCATGTGAATTTGCTCTTC
Brassica rapa subsp. pekinensis, pooled multiple clones, WORKING DRAFT SEQUENCE, 878 unordered pieces.
FJ789640.1:2958371-2958390
GAGAAGAGCTAATGAAAGTGAAAGTTGGAG2958371AAGGTAACGGTGGCAGTGAGGGGCTCTTGTTCCATGTGAATTTGCTCTTC
Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB047M06, complete sequence.
AC189370.2:79902-79921
GAGAAGAGCTAATGAAAGTGAAAGTTGGAG79902AAGGTAACGGTGGCAGTGAGGGGCTCTTGTTCCATGTGAATTTGCTCTTC
Brassica napus cultivar Xiang5A chromosome 8.
CP123883.1:1129694-1129713
GAGAAGAGCTAATGAAAGTGAAAGTTGGAG1129694AAGGTAACGGTGGCAGTGAGGGGCTCTTGTTCCATGTGAATTTGCTCTTC
Brassica napus microsatellite cen56F207-1-10 sequence.
JX131118.1:2-21
T2AAGGTAACGGTGGCAGTGAGGGGCTCTTGTTCCATGTGAATTTGCTCTTC
Lipophrys pholis genome assembly, chromosome: 1.
OY726533.1:28889240-28889259
AAGGCAGTACAAGCCATCCACACTCATTGC28889240CTCACTGCCACCGTTACCTTCATCGCCTTCACCTGTGGAGCTGAATCCCA
Sequence 23179 from Patent WO2008034648.
FB803906.1:66-85
GAAGAGCAAATTCACATGGAACAAGAGCCC66CTCACTGCCACCGTTACCTTCTCCAACTTTCACTTTCATTAGCTCTTCTC
Sequence 107863 from Patent WO2008034648.
FB888590.1:66-85
GAAGAGCAAATTCACATGGAACAAGAGCCC66CTCACTGCCACCGTTACCTTCTCCAACTTTCACTTTCATTAGCTCTTCTC
Sequence 108470 from Patent WO2008034648.
FB889197.1:66-85
GAAGAGCAAATTCACATGGAACAAGAGCCC66CTCACTGCCACCGTTACCTTCTCCAACTTTCACTTTCATTAGCTCTTCTC
Sequence 23179 from Patent EP2090662.
HB673965.1:66-85
GAAGAGCAAATTCACATGGAACAAGAGCCC66CTCACTGCCACCGTTACCTTCTCCAACTTTCACTTTCATTAGCTCTTCTC
Sequence 107863 from Patent EP2090662.
HB758649.1:66-85
GAAGAGCAAATTCACATGGAACAAGAGCCC66CTCACTGCCACCGTTACCTTCTCCAACTTTCACTTTCATTAGCTCTTCTC
Sequence 108470 from Patent EP2090662.
HB759256.1:66-85
GAAGAGCAAATTCACATGGAACAAGAGCCC66CTCACTGCCACCGTTACCTTCTCCAACTTTCACTTTCATTAGCTCTTCTC
Sequence 185646 from Patent EP2090662.
HB836432.1:108-127
GAAGAGCAAATTCACATGGAACAAGAGCCC108CTCACTGCCACCGTTACCTTCTCCAACTTTCACTTTCATTAGCTCTTCTC
Sequence 185648 from Patent EP2090662.
HB836434.1:67-86
GAAGAGCAAATTCACATGGAACAAGAGCCC67CTCACTGCCACCGTTACCTTCTCCAACTTTCACTTTCATTAGCTCTTCTC
BN15.001A04F011204 BN15 Brassica napus cDNA clone BN15001A04, mRNA sequence.
CD812921.1:108-127
GAAGAGCAAATTCACATGGAACAAGAGCCC108CTCACTGCCACCGTTACCTTCTCCAACTTTCACTTTCATTAGCTCTTCTC
BN15.020A11F020211 BN15 Brassica napus cDNA clone BN15020A11, mRNA sequence.
CD813546.1:84-103
AAGAAACAAATTCACATTGAACAAGAGCCC84CTCACTGCCACCGTTACCTTCTCCAACTTTCACCTTCATTAGCTCTTCTC
78-E022826-021-016-L19-frev ADIS-MPIZ 021 Brassica napus cDNA clone MPIZp1022L1916Q, mRNA sequence.
CX189237.1:65-84
GAAGAGCAAATTCACATGGAACAAGAGCCC65CTCACTGCCACCGTTACCTTCTCCAACTTTCACTTTCATTAGCTCTTCTC
Brassica rapa subsp. pekinensis mRNA, clone: BRest07-N08, 5'-end sequence.
DC845796.1:84-103
GAAGAGCAAATTCACATGGAACAAGAGCCC84CTCACTGCCACCGTTACCTTCTCCAACTTTCACTTTCATTAGCTCTTCTC
Brassica oleracea var. viridis mRNA, clone: KALE-023L06, 5' end sequence.
DK464610.1:82-101
AAGAAACAAATTCACATTGAACAAGAGCCC82CTCACTGCCACCGTTACCTTCTCCAACTTTCACTTTCATTAGCTCTTCTC
Brassica oleracea var. viridis mRNA, clone: KALE-024O05, 5' end sequence.
DK465064.1:44-63
AAGAAACAAATTCACATTGAACAAGAGCCC44CTCACTGCCACCGTTACCTTCTCCAACTTTCACTTTCATTAGCTCTTCTC
Brassica oleracea var. viridis mRNA, clone: KALE-056C09, 5' end sequence.
DK477006.1:44-63
AAGAAACAAATTCACATTGAACAAGAGCCC44CTCACTGCCACCGTTACCTTCTCCAACTTTCACTTTCATTAGCTCTTCTC
Brassica oleracea var. viridis mRNA, clone: KALE-063M24, 5' end sequence.
DK479943.1:44-63
AAGAAACAAATTCACATTGAACAAGAGCCC44CTCACTGCCACCGTTACCTTCTCCAACTTTCACTTTCATTAGCTCTTCTC
Brassica oleracea var. viridis mRNA, clone: KALE-088A11, 5' end sequence.
DK489212.1:44-63
AAGAAACAAATTCACATTGAACAAGAGCCC44CTCACTGCCACCGTTACCTTCTCCAACTTTCACTTTCATTAGCTCTTCTC
Brassica oleracea var. viridis mRNA, clone: KALE-113K05, 5' end sequence.
DK499011.1:44-63
AAGAAACAAATTCACATTGAACAAGAGCCC44CTCACTGCCACCGTTACCTTCTCCAACTTTCACTTTCATTAGCTCTTCTC
53COT5_T3_003_B02_28JUN2004_014 Brassica napus 36hr germinating seed library 53COT5 Brassica napus cDNA 5', mRNA sequence.
DY020229.1:73-92
AAGAAACAAATTCACATTGAACAAGAGCCC73CTCACTGCCACCGTTACCTTCTCCAACTTTCACCTTCATTAGCTCTTCTC
BNBS8DCT_UP_006_A11_15APR2005_095 Brassica napus seeds BNBS8DCT Brassica napus cDNA 5', mRNA sequence.
EE458885.1:111-130
GAAGAGCAAATTCACATGGAACAAGAGCCC111CTCACTGCCACCGTTACCTTCTCCAACTTTCACTTTCATTAGCTCTTCTC
OL7317R Brassica oleracea var. alboglabra leaf cDNA library Brassica oleracea var. alboglabra cDNA clone OL7317, mRNA sequence.
EH425790.1:15-34
TGGAACAAGAGCCC15CTCACTGCCACCGTTACCTTCTCCAACTTTCACTTTCATTAGCTCTTCTC
EST5357 3-9 DAP Brassica Napus seed cDNA library Brassica napus cDNA clone B249A051, mRNA sequence.
EL627850.1:93-112
AAGAAACAAATTCACATTGAACAAGAGCCC93CTCACTGCCACCGTTACCTTCTCCAACTTTCACCTTCATTAGCTCTTCTC
BNSCS2CT_UP_225_C06_28APR2007_044 Brassica napus BNSCS2CT Brassica napus cDNA 5', mRNA sequence.
EV032205.1:98-117
GAAGAGCAAATTCACATGGAACAAGAGCCC98CTCACTGCCACCGTTACCTTCTCCAACTTTCACTTTCATTAGCTCTTCTC
BNSCS3CT_UP_087_A07_05MAY2007_063 Brassica napus BNSCS3CT Brassica napus cDNA 5', mRNA sequence.
EV043369.1:96-115
GAAGAGCAAATTCACATGGAACAAGAGCCC96CTCACTGCCACCGTTACCTTCTCCAACTTTCACTTTCATTAGCTCTTCTC
BNSCS4CT_UP_114_B08_20MAY2007_062 Brassica napus BNSCS4CT Brassica napus cDNA 5', mRNA sequence.
EV067176.1:14-33
GGAACAAGAGCCC14CTCACTGCCACCGTTACCTTCTCCAACTTTCACTTTCATTAGCTCTTCTC
BR027207 floral bud cDNA library KBFL Brassica rapa subsp. pekinensis cDNA clone KBFL-105E06 5', mRNA sequence.
EX042563.1:35-54
GAAGAGCAAATTCACATGGAACAAGAGCCC35CTCACTGCCACCGTTACCTTCTCCAACTTTCACTTTCATTAGCTCTTCTC
BR066934 silique cDNA library KBSP Brassica rapa subsp. pekinensis cDNA clone KBSP-074D09 5', mRNA sequence.
EX082290.1:19-38
CACATGGAACAAGAGCCC19CTCACTGCCACCGTTACCTTCTCCAACTTTCACTTTCATTAGCTCTTCTC
BN18DYSC_UP_048_B10_20FEB2008_078 BN18DYSC Brassica napus cDNA 5', mRNA sequence.
FG557078.1:113-132
GAAGAGCAAATTCACATGGAACAAGAGCCC113CTCACTGCCACCGTTACCTTCTCCAACTTTCACTTTCATTAGCTCTTCTC
BN18DYSC_UP_068_G05_28FEB2008_035 BN18DYSC Brassica napus cDNA 5', mRNA sequence.
FG558907.1:43-62
AAGAAACAAATTCACATTGAACAAGAGCCC43CTCACTGCCACCGTTACCTTCTCCAACTTTCACCTTCATTAGCTCTTCTC
BN18DYSC_UP_078_H08_28FEB2008_050 BN18DYSC Brassica napus cDNA 5', mRNA sequence.
FG559802.1:43-62
AAGAAACAAATTCACATTGAACAAGAGCCC43CTCACTGCCACCGTTACCTTCTCCAACTTTCACCTTCATTAGCTCTTCTC
BN18DYSC_UP_112_F03_7APR2008_021 BN18DYSC Brassica napus cDNA 5', mRNA sequence.
FG562328.1:104-123
GAAGAGCAAATTCACATGGAACAAGAGCCC104CTCACTGCCACCGTTACCTTCTCCAACTTCCACTTTCATTAGCTCTTCTC
BN18DYSC_UP_132_E06_3APR2008_040 BN18DYSC Brassica napus cDNA 5', mRNA sequence.
FG564085.1:84-103
AAGAAACAAATTCACATTGAACAAGAGCCC84CTCACTGCCACCGTTACCTTCTCCAACTTTCACCTTCATTAGCTCTTCTC
BN24DYSC_UP_017_G07_1FEB2008_051 BN24DYSC Brassica napus cDNA 5', mRNA sequence.
FG572292.1:84-103
AAGAGACAAATTCACATTGAACAAGAGCCC84CTCACTGCCACCGTTACCTTCTCCAACTTTCACCTTCATTAGCTCTTCTC
BN24DYSC_UP_061_E06_6FEB2008_040 BN24DYSC Brassica napus cDNA 5', mRNA sequence.
FG575950.1:43-62
AAGAAACAAATTCACATTGAACAAGAGCCC43CTCACTGCCACCGTTACCTTCTCCAACTTTCACCTTCATTAGCTCTTCTC
Rattus norvegicus mRNA 5-prime sequence from clone TL0AAA81YP07 (TL0AAA81YP07FM1).
FQ084721.1:354-373
ACCTCATTTGCCTCCTTTAGTCTGGAAGAC354CTCACTGCCACCGTTACCTTTCCTTTATGGCCTTGTGACACAGTCTTCAT
MMN2_639 Brassica rapa mature median nectary, normalized (MMN2) Brassica rapa cDNA similar to glucose-6-phosphate/phosphate translocator-related, mRNA sequence.
GR726023.1:105-124
GAAGAGCGAATTCACATGGAACAAGAGCCC105CTCACTGCCACCGTTACCTTCTCCAACTTTCACTTTCATTAGCTCTTCTC
TSA: Brassica rapa subsp. pekinensis RNA, contig: CF3_14241.
FX708112.1:125-144
GAAGAGCAAATTCACATGGAACAAGAGCCC125CTCACTGCCACCGTTACCTTCTCCAACTTTCACTTTCATTAGCTCTTCTC
Rattus norvegicus clone CH230-26F15, WORKING DRAFT SEQUENCE, 4 unordered pieces.
AC098223.6:222558-222577
ACCTCATTTGCCTCCTTTAGTCTGGAAGAC222558CTCACTGCCACCGTTACCTTTCCTTTATGGCCTTGTGACACAGTCTTCAT
Brassica rapa subsp. pekinensis, pooled multiple clones, WORKING DRAFT SEQUENCE, 74 unordered pieces.
FJ789637.1:12310-12329
GAAGAGCAAATTCACATGGAACAAGAGCCC12310CTCACTGCCACCGTTACCTTCTCCAACTTTCACTTTCATTAGCTCTTCTC
Brassica napus cultivar Xiang5A chromosome 12.
CP123887.1:54755158-54755177
AAGAAACAAATTCACATTGAACAAGAGCCC54755158CTCACTGCCACCGTTACCTTCTCCAACTTTCACCTTCATTAGCTCTTCTC
Brassica napus genome assembly, chromosome: A07.
HG994361.1:28261017-28261036
GAAGAGCAAATTCACATGGAACAAGAGCCC28261017CTCACTGCCACCGTTACCTTCTCCAACTTTCACTTTCATTAGCTCTTCTC
Brassica napus genome assembly, chromosome: C06.
HG994370.1:48785560-48785579
AAGAAACAAATTCACATTGAACAAGAGCCC48785560CTCACTGCCACCGTTACCTTCTCCAACTTTCACCTTCATTAGCTCTTCTC
Brassica napus microsatellite H5F213-2 sequence.
JX131138.1:116-135
AAGAAACAAATTCACATTGAACAAGAGCCC116CTCACTGCCACCGTTACCTT
Brassica napus microsatellite H5F214-3 sequence.
JX131140.1:134-153
GAAGAGCAAATTCACATGGAACAAGAGCCC134CTCACTGCCACCGTTACCTTCTCCAACTTTCACTTTCATTAGCTCTTCTC
Brassica napus microsatellite H5F214-3 sequence.
JX131140.1:191-210
TTTCACTTTCATTAGCTCTTCTCTATTTAG191CTCACTGCCACCGTTACCTT
Brassica napus microsatellite H5F214-4 sequence.
JX131141.1:134-153
GAAGAGCAAATTCACATGGAACAAGAGCCC134CTCACTGCCACCGTTACCTT
Brassica napus microsatellite H5F214-5 sequence.
JX131142.1:134-153
GAAGAGCAAATTCACATGGAACAAGAGCCC134CTCACTGCCACCGTTACCTT
Brassica napus microsatellite H5F215-3 sequence.
JX131143.1:132-151
GAAGAGCAAATTCACATGGAACAAGAGCCC132CTCACTGCCACCGTTACCTT
Brassica napus microsatellite H5F215-6 sequence.
JX131144.1:134-153
GAAGAGCAAATTCACATGGAACAAGAGCCC134CTCACTGCCACCGTTACCTT
Brassica napus microsatellite H5F215-9 sequence.
JX131145.1:96-115
AAGAAACAAATTCACATGGAACAAGAGCCC96CTCACTGCCACCGTTACCTT
Brassica napus microsatellite H5F217-1 sequence.
JX131146.1:96-115
AAGAAACAAATTCACATGGAACAAGAGCCC96CTCACTGCCACCGTTACCTT
Brassica napus microsatellite H6F218-8 sequence.
JX131149.1:96-115
AAGAAACAAATTCACATGGAACAAGAGCCC96CTCACTGCCACCGTTACCTTA
Brassica rapa genome, scaffold: A07.
LR031574.1:27248167-27248186
GAAGAGCAAATTCACATGGAACAAGAGCCC27248167CTCACTGCCACCGTTACCTTCTCCAACTTTCACTTTCATTAGCTCTTCTC
Brassica oleracea HDEM genome, scaffold: C6.
LR031880.1:45045976-45045995
AAGAAACAAATTCACATTGAACAAGAGCCC45045976CTCACTGCCACCGTTACCTTCTCCAACTTTCACTTTCATTAGCTCTTCTC
Brassica rapa genome assembly, chromosome: A07.
LS974623.2:27591123-27591142
GAAGAGCAAATTCACATGGAACAAGAGCCC27591123CTCACTGCCACCGTTACCTTCTCCAACTTTCACTTTCATTAGCTCTTCTC

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/AAGGTAACGGTGGCAGTGAG
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : AAGGTAACGGTGGCAGTGAG | format : html | download : | debug : 

0.008 | 0.008 | search_start;
0.406 | 0.397 | search_plus_done; http://172.18.8.135:50400/match?q=AAGGTAACGGTGGCAGTGAG&k=0&no_gap=0&offset=0&limit=50
1.996 | 1.591 | search_minus_done; http://172.18.8.135:50400/match?q=CTCACTGCCACCGTTACCTT&k=0&no_gap=0&offset=0&limit=42
2.033 | 0.037 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).