GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-07 07:17:49, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

TSA: Nicotiana benthamiana isotig01508.Nb_flower mRNA sequence.
KA730326.1:14-33
CCCAGTTCACCCC14AAGTCCTTCCACATTGTGCCCCAAAAACACCAACAATGTTACTAGGACCA
Capsicum annuum Takanotsume DNA, chromosome 3, sequence.
AP026698.1:91701948-91701967
GTGGGAGGAGATGTCACCCCAGTTAACACC91701948AAGTCCTTCCACATTGTGCCCCAAAAAGAACAAGAATGTTACTAGGAAAA
KF8C.110H03F.051216T7 KF8 Nicotiana tabacum cDNA clone KF8C.110H03, mRNA sequence.
EB427579.1:142-161
TGGCCCTACTAACTTTGTTGGTGTTTTTGG142GGCACAATGTGGAAGGACTTGGGGTGAACTGGGGTGATATCTCCTCCCAC
AGN_PNL226af1_b6.trimmed.seq AGN_PNL Nicotiana tabacum cDNA 5', mRNA sequence.
FG197461.1:142-161
TGGCCCTACTAACTTTGTTGGTGTTTTTGG142GGCACAATGTGGAAGGACTTGGGGTGAACTGGGGTGATATCTCCTCCCAC
KS20002G11 KS20 Capsicum annuum cDNA, mRNA sequence.
GD093532.1:153-172
TATTCGCTACAACAGTCTTGTTCTTTTTGG153GGCACAATGTGGAAGGACTTGCTGTTAACTGGGGTGACATCTCCTCCCAC
KS20008C02 KS20 Capsicum annuum cDNA, mRNA sequence.
GD094031.1:182-201
TTTTCCTAGTAACATTCTTGTTCTTTTTGG182GGCACAATGTGGAAGGACTTGGTGTTAACTGGGGTGACATCTCCTCCCAC
KS20012G12 KS20 Capsicum annuum cDNA, mRNA sequence.
GD094458.1:26-45
GCACGAGGATTCTTGTTCTTTTTGG26GGCACAATGTGGAAGGACTTGGTGTTAACTGGGGTGACATCTCCTCCCAC
KS20036B06 KS20 Capsicum annuum cDNA, mRNA sequence.
GD096617.1:182-201
TTTTCCTAGTAACATTCTTGTTCTTTTTGG182GGCACAATGTGGAAGGACTTGGTGTTAACTGGGGTGACATCTCCTCCCAC
TSA: Nicotiana benthamiana isotig02092.Nb_flower mRNA sequence.
KA730905.1:734-753
TGGTCCTAGTAACATTGTTGGTGTTTTTGG734GGCACAATGTGGAAGGACTTGGGGTGAACTGGGGC
Capsicum annuum cultivar G1-36576 isolate CaT2T chromosome 3.
CP124729.1:200454692-200454711
TTTTCCTAGTAACATTCTTGTTCTTTTTGG200454692GGCACAATGTGGAAGGACTTGGTGTTAACTGGGGTGACATCTCCTCCCAC

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/AAGTCCTTCCACATTGTGCC
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : AAGTCCTTCCACATTGTGCC | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.113 | 0.105 | search_plus_done; http://172.18.8.135:50400/match?q=AAGTCCTTCCACATTGTGCC&k=0&no_gap=0&offset=0&limit=50
0.553 | 0.440 | search_minus_done; http://172.18.8.135:50400/match?q=GGCACAATGTGGAAGGACTT&k=0&no_gap=0&offset=0&limit=48
0.559 | 0.006 | cgi_end;

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